Template-based Modeling Results for YGCJ_ECOLI

Submitted Primary Sequence

>Length 363
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
CCEEEEEEEECCCCHHHCCCCCCCCCCEEEECCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHCEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
431001000011001000121222111101110120010012003200230011133123222211101201210233123322220012001211233234234222300121011101200220030113223333224223321111223233000000000100212213202020000002101014021110100001113211011112131100000100001011004102221331022001100200022022133312012100100001123211200101221132431102200210230023004012231200000023133121113313203202210242235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
1	SPARKS	3ps0a	0.110	0.780	1.051	threading_1	--------------------------------------------HHMISGSVRFLVNLESLNHRTAPVGYLVRYVPVISGEALAHAYQASLVDIAKKEGLPVGSLSSQYEFIKFSTDEALKI---------EGIKEPKDYNDARRFEVEVMLKD---VIADVGGFMYAGGAPVRRTSR---IKLGYMI---PALRGDEIPAQLEAQFHVRFSAIFNVEVSSALYTFSFELDEDLITFGEKVKGEEELERQKAKRVKSAIKAL-YSLLSGFLPSMKLMSLVVTKTDFPFMPE-----PAHDDD-----YIKTTIMRLGKAKGVLNGNLAKAYVINNEGIEVG---TVLSTVEDLVVKLEE----
2	PROSPECT2	1hr6b	0.080	0.898	1.391	threading_2	NTSSATVGIFVDAGSRAENVKNNGSRENTVY----YAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQLGRTILGPIKNIKSITRTDLKDYHEKLVQYAQVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSTSYADSGLWGMYIVTNVRLIVNEIGKISDAEVNRAKAQLKAALLLSL----------------------DGSTAIVEDIGRQVTGKRLSPEEVFEQVKDDIIMWANYRLQNKPVSMVALGN-------TSTVPNVSYIEEKLN----Q
3	HHPRED-l	3ps0_A	0.128	0.730	2.286	threading_3	--HMISGSVRFLVNLESLN------HRTAPVTGRYVPVISGEALAHAYQASLVDIAKKEPVGSLSSQ----------YEFIKFST---DEALKI---EGI-------------------------------KEPKDYN--DARRFEVEVM----LKDVIADVGGFMYAGG---APVRRTSRIKLGYMIPALRGQLEAQFHVRFS--------AIFNVEVSSALYTFSFELDEDLIAVPSTFKGERQKAKRVKSAIKALYSLL-------FLPSMKLMSLVVTKTDFPFMPEP------AHDDDYIKTTIMRLGKAKG----VLN-GNLAKAYVINN-EGVG---TVLSTVEDLVVKLEE----
4	HHPRED-g	3ps0_A	0.135	0.733	1.930	threading_4	---MISGSVRFLVNLESLN------HRTAPVTGRYVPVISGEALAHAYQASLVDIAKKEPVGSLSSQYE--------FIKFSTDE-ALKI-------EGIKEP-KDYNDA---------------------------------RRFEVEVM---LKDVIADVGGFMYAGG---APVRRTSRIKLGYMIPALRGQLEAQFHVRFS--------AIFNVEVSSALYTFSFELDEDLIAVPSTFGGERQKAKRVKSAIKALYSLG-------FLPSMKLMSLVVTKTDFPFMPEP------AHDDDYIKTTIMRLGKAKGVLN---GNLAKAYVINNEGIE-VG---TVLSTVEDLVVKLEE----
5	PROSPECT2	1ezva	0.090	0.915	1.385	threading_5	AEVTASVGVVFGSGAANENPYNNGRDFQSYI-----VSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNPTRGTLESLENLVVADLESFHEDLVNSIESKNLSLQTGTKPVLKKKARLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSDSGLWGFSTATRLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDA----------------NLLGAEVL--IKGSKLSLGEAFKKIVKDVKAWAGKRLWDQDIAIAGTGQIEG-------LLDYMRIRSDMSM-MRW
6	PROSPECT2	1hr6a	0.058	0.942	1.333	threading_6	ARTFSALGLYIDAGSRFEGRNLKGGNYQCTSSRMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYHEKALELTGKYLGDWQSTHPPITKKVAQYTGVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSYTHVLNQYYFVENCVAFDSGIFGISLSCIPQAAPQAVLRLTEDEVSRAKNQLKSSLLMNLES------------------KLVELEDMGRQVL--MHGRKIPVNEMISKIPDDISRVAEMIFTGNVNNAG-NGKGRATVVMQGDRGSFGDVENVLKANSSS
7	PROSPECT2	1m5ya	0.093	0.857	1.329	threading_7	VDKVA-----------------------AVVNNGV---VLESDVDGLMQSVKLNAAQARQQLPDDATLRHIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQTAKKGDIVGPIRSGVGFHILKVNDLRGLLKPSPIMTDEQARVKLEQIAADIKSGKTTAKEFSQDPGSANQGGDLGWATPDPAFRDALTRPVHSSFGWHRAYRMLMNRKFSEEAASW--------------------------MQEQRASAYVKILS
8	PROSPECT2	1ee4a	0.110	0.879	1.287	threading_8	----------QELPQQQLNSDD------------------MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLWTLSNLCRGKKPQPDWSVVSQATLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRI---------PKRLVELLSHESTLVQTPALRAVLPALRLLLSSPKENNITAGNTEQIQAVIDANRPDIIRYLVSQGCIADNRIIEVTLDALENILKMGEADKEARG-------LNINENADFIEKAGGMEKIFNKIYEKAYK
9	MUSTER	3ea5B	0.115	0.981	0.659	threading_9	QPENVKRASLLALGYMCESADPSNNILIAIVQGAQSKAVRLAALNALADSLIFIKNNMEREG-ERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKD-----VVPNLLNLLTRQNEDPEDDGACLQLFAQNCGNHILEPVLEFNITADNWRNREAAVMAFGSIMDGPRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQA-CLIGLQDHPWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDAETSASISTFVMDKLGQ
10	SPARKS	1eno_	0.108	0.664	0.675	threading_10	-----------------LPIDLRG--KRAFIAG-----------------------IADDNG-----YGWAVAKSLAAAGVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDIL-----VHSLANGPEVSK----------PLLETSRK-GY--------------------------------LAAISASS---------YSFVSLLSHFLPIMNPGG------------ASISLT----YIAS--ERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPI

Predicted Tertiary Structure


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TM-score=0.429 to 1j27A SCOP code=d.58.50.1	TM-score=0.703 to 1hr6D SCOP code=d.185.1.1	TM-score=0.438 to 3bpdF SCOP code=d.58.61.1	TM-score=0.445 to 3bpdF SCOP code=d.58.61.1	TM-score=0.697 to 2ibzA SCOP code=d.185.1.1