Template-based Modeling Results for YGBN_ECOLI

Submitted Primary Sequence

>Length 454
MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDVGFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTIIGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDVGFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTIIGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDVGFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTIIGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI
4521010000000000000000101010000000000000000212022003001210110000000000000000200220100210021003201332120010000000000000000000001001000321411001000000000000000001110000001112021010110000000000000000021023222221232233232232233112422332321101100000000000000100021112322101000200111000000000000000113322213201200120021000000000001000300220200200010032020100000000000010011000000000000001001212201000000000000000110100000002210102112002011000000000000000001112
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDVGFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTIIGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI
1	PROSPECT2	1jdha	0.086	0.927	2.235	threading_1	DEDQVVVNKAAVMVHMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMSVLFYAITTLHNLLLHQEGAKMAVRLMVALLNKTNVKFLAITTDCLQILQESKLIILAGPQALVNIMRTYTYEKLLWTTSRVLKVL-------SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM------------EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE--------------AAEAIEAEGATAPLTELLHTYAAAVLFRMS
2	PPA-I	1pw4A	0.102	0.863	1.210	threading_2	YRRLRWQIFLGIFFGYAAYYLVRK------NFALAMPYL-VEQGFS--------RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHA-----ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG------------------------------------------WDGGFMVMIGGSILAVILLIVVM
3	PROSPECT2	1ejlI	0.099	0.846	2.009	threading_3	SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES-------AWALTNIASGTSEQTKAVVDGG----AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKAIDPLLALLAVPDLSTLACGYLRNLT-----------WTLSNLCRNKNPAPPLDAVEQILPTLVRL-------------------------------------LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV-VPQLVKLLGATELPIVTPALRAIGNIV---TGTDEQTQKVIDAGALATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDKIEALQRASLNLIEKYFS
4	PPA-I	3zuxA	0.078	0.652	1.100	threading_4	---------------------------------------------------NILSKISSFIGKTFSLWAALFAAAAFFAPDTFKPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCC------PGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE---------------IQAAGM---------LMSIVKMVLLPIVLGLIVHKVL-----GSKTEKLTDAL--PLVSVAAIVLIIGAVVGAS----KGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAVPGALFSVWHNISGSLLATYWAAKA------------------------------------------------------------------
5	PROSPECT2	1ee4a	0.067	0.857	1.983	threading_5	SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA-------AWALTNIASGTSAQTKVVVDADAVPLFIQ-LLYTGSVEVKEQAIWALGNVAGDSTDY-RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ----------ALPTLAKL--------------------------------------------IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAETKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA--DKEARGLNINENADFIEKAGGMEKIFNCIYEKAYKIIETYF
6	PPA-I	3dh4A	0.066	0.938	1.088	threading_6	ISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSV--LYLGGLALETILGIPLALFALVYSIVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSWVANLYYWGFNAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAAT--------NLPSAANADKAYPWLTQFLPVGVKGVVFAALA-----AAIVSSLASM---LNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIACLIAP------MLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWKTTSKGAIIGVVASIPFALFLKFMPLSMPLYTLLFTMVVIAFTINDDDPKGISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWVLYK----
7	PROSPECT2	1b3ua	0.107	0.969	1.966	threading_7	YDEDEVLLALAEQLYVHCLLPPLESLETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGFTSRTSACGLFSVCYPRVSSAAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD-NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL------LPLFLAQLKDECPEVRLNIISNLDCVNEV--IGIRQLSQSLLPAIVELAEWRVRLAIIEYMPLLAGQLGLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITKSLQKIGPILDNSTLQS-EVKPILEKLVKYFAQEALTVLS
8	PPA-I	1xm9A	0.106	0.835	1.077	threading_8	SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN------QNVQQAAAGALRNLVF----RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSKEELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTALMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-----HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL------------------------------------------------------------
9	PROSPECT2	1w63A	0.110	0.980	1.890	threading_9	MPAPIRLRELIRTIQAEEREMIQKECAAIRSSFVAKLLYMHMLGYPAHFGQLECLKLIAS--QKFTDKRIGYLGAMLLLDERQDHLLMTNCIKNDLNHSTQFVQGLALCTLGCM-----GSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQILYETVLTIMDIKSESVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKRAMELSFALVNGKELLYFLDSCECASGIFLAAEKYAPSKRWHIDTIMRVLTAVPNLIQLITAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQC--EEEEPIQVTEDEVLDILTRGYALTAIMKLSIKKVVSIYG
10	PPA-I	2jdqB	0.081	0.866	1.069	threading_10	----------------------------------------------TSDMIEMIFS--KSPEQQLSATQKFRKLLIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG-----DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSD------TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQLQSLLHLLESIKKEACWTISNITAGRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEA--KRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAF

Predicted Tertiary Structure


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TM-score=0.555 to 2q6hA SCOP code=f.54.1.1	TM-score=0.692 to 1wa5B SCOP code=a.118.1.1	TM-score=0.857 to 1pw4A SCOP code=f.38.1.1	TM-score=0.888 to 1kpkA SCOP code=f.20.1.1	TM-score=0.768 to 1ialA SCOP code=a.118.1.1