Template-based Modeling Results for YGBJ_ECOLI

Submitted Primary Sequence

>Length 302
MKTGSEFHVGIVGLGSMGMGAALSYVRAGLSTWGADLNSNACATLKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAGNSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGITLPGAKS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKTGSEFHVGIVGLGSMGMGAALSYVRAGLSTWGADLNSNACATLKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAGNSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGITLPGAKS
CCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKTGSEFHVGIVGLGSMGMGAALSYVRAGLSTWGADLNSNACATLKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAGNSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGITLPGAKS
55433321000000001000001000301010000101230021035210110131021003401000000021210120010320003203301000000100120022002002313020010101102230120100000102320022001002001020010022102010020000000000000001000002302010310010023011102001120221021212120001000100100020043141201101001200210142222431100002002312232244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKTGSEFHVGIVGLGSMGMGAALSYVRAGLSTWGADLNSNACATLKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAGNSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGITLPGAKS
1	MUSTER	3ckyA	0.312	0.977	3.191	threading_1	-----SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQA-CENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGD-TGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSVSG
2	SPARKS	3pdua	0.272	0.950	4.836	threading_2	-----MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGAR-QASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGE-VGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLEA--------
3	PROSPECT2	3ckyA	0.312	0.977	4.557	threading_3	-----SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQA-CENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGD-TGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSSGG
4	PPA-I	3ckyA	0.312	0.977	4.409	threading_4	-----SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQ-ACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGD-TGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSVSG
5	HHPRED-l	1yb4_A	0.268	0.927	2.868	threading_5	-------KLGFIGLGI-GSP-AINLARAGHQLHVTTIGPV-ADELLSLGAV-NVETARQVTEFADIIFI-VPDTPQVEDVLFGEHGCAKTSLQGKTIVD-SSISPIETKRFAQRVNE-GADYLDAPVSGGEIGAREGTLSI-VGGEQKVFDRVKPLFDILGKNITLVG-GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL-GGFASSRILEVHGER-INRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSA-VQALEL-ANHKL--
6	HHPRED-g	1yb4_A	0.264	0.927	2.762	threading_6	-------KLGFIGLGI-GSP-AINLARAGHQLHVTTIGP-VADELLSLG-AVNVETARQVTEFADIIFI-VPDTPQVEDVLFGEHGCAKTSLQGKTIVD-SSISPIETKRFAQRVNE-GADYLDAPVSGGEIGAREGTLSI-VGGEQKVFDRVKPLFDILGKNITLVGG-NGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL-GGFASSRILEVHGER-INRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSA-VQALEL-ANHKL--
7	SP3	3pdua	0.275	0.950	5.005	threading_7	M-----TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGAR-QASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGE-VGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLEA--------
8	SAM-T99	3ckyA	0.308	0.977	4.034	threading_8	-----SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGA-QACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHV-GDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFISGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSVSG
9	MUSTER	2uyyA	0.223	0.964	3.184	threading_9	I-TPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR-LGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGE-VGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYIH--------
10	SPARKS	3pefa	0.269	0.947	4.825	threading_10	-----SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAE-RAATP-EVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGD-VGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYER--------

Predicted Tertiary Structure


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TM-score=0.845 to 3cumA SCOP code=a.100.1.1	TM-score=0.847 to 3cumA SCOP code=a.100.1.1	TM-score=0.900 to 1vpdA SCOP code=a.100.1.1	TM-score=0.847 to 3cumA SCOP code=a.100.1.1	TM-score=0.847 to 3cumA SCOP code=a.100.1.1