Template-based Modeling Results for YGBI_ECOLI

Submitted Primary Sequence

>Length 255
MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASRALVKQDLSLLVAKNE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASRALVKQDLSLLVAKNE
CCHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCEEEEECCEEECCCCCEECHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCEEEEEECCHHHCCEEEECCCCCHHHHHHHHHCCCEEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASRALVKQDLSLLVAKNE
442230231002102532202022004303112210220032025211000001001012222322223112211121120002100210431100001000001000220242320000000020011013222010000101013323000030001003201000000001001131001112210101210021130100001113121200000030220100001320232003003523110110345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASRALVKQDLSLLVAKNE
1	SPARKS	2w48a	0.150	0.886	1.289	threading_1	SDDIRLIVKIAQLYYEQD-MTQAQIARELGIYRTTISRLLKRGREQGIVT-----IAINYDYNENLWLEQQLKQKEEQLSAMGQHGALLVEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAARDSLDVALVGGSPAIRDGAFYGSEESDDLNA-------RHVAGYDINGLVDTNMSELSIEMAKLRQARYSIGIA-MGEEKYSGILGALHGRYINCLVTN----RETAELLLK-----------
2	PROSPECT2	2w48A	0.135	0.961	1.749	threading_2	-SDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINY---------DYNENLWLEQQLKQKQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAARLKAESHLADFPALLDNPLIRSQHFKTISSYWDLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICGLVDTNMSEKTLSIEMAKARYSIMGEEKYSGILGALHGRYINCLVTNRK
3	PPA-I	1uj5A	0.129	0.608	1.310	threading_3	------------------------------------------------------------------------RPLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELAELKGVVGVPTSRATEELAKRE--------GIPLVDLPPE-------------GVDLAIDGADEIAPGLLIKGMGGALLREKIVERVAKEFIVIADHTKKVPV-------LGRGPPVEIVPFGYRATLKAIADLGGEPELRMDG
4	SP3	2w48a	0.157	0.976	1.018	threading_4	SDDIRLIVKIAQLYYEQD-MTQAQIARELGIYRTTISRLLKRGREQGIVT-----IAINYDYNENLWLEQQLKQKEEQLSAMGQHGALLVEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAARLKAESHLADFPALLDNNGIMQQHFKTISSYWSLDVALVGIGSPAIRAFYGSEESDDLNARHVADICSRFYGLVDTNMSEKTLSIEMAKLRQARYSIGGEEKYSGILGALHGRYINCLVTNRE
5	HHPRED-l	3rrl_B	0.182	0.624	3.484	threading_5	------------------------------------------------------------------------------REAIIKRAAKELKEG-YVNLGIGLPT-LVANEVSG--NIVFQSENGLLGYPLEGSVDADLINAGKEVVPGASFFNSADSFA-IRGGHIDLAILGG-EVSQNGLANW-IPKKLIK-DLVHGAKKVIVI-EHCNKGESKVKKECSLGVVHQLITDLAVFEF-----SNN--A-KLVEE-
6	SAM-T99	1i1gA1	0.240	0.196	1.229	threading_6	---DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	HHPRED-g	3rrl_B	0.171	0.643	3.183	threading_7	------------------------------------------------------------------------------REAIIKRAAKELKEG-YVNLGIGLPT-LVANEVS-G-NIVFQSENGLLGYPLEGSVDADLINAGKEVVPGASFFNSADSFA-IRGGHIDLAILGG-EVSQNGLANW-IPKKLIK-DLVHGAKKVIVI-EHCNKGESKVKKECSLGVVHQLITDLAVSLDQVKEKTEAEFEVRL----
8	PROSPECT2	1bia_	0.147	0.827	1.436	threading_8	MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVVFTVPGKGYSLPEPIQLLN---------------AKQILGQLDGGSVAVLPVIDSTNQYLLIGELKSGDACIAEYIVMAEVLRKLGADKVRVKWNDLYLQDRKLAG-----ILVELTGAAQIINMAMWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGL------------------------APYLSRWEKINRPVKLIIGD
9	SP3	1ks2a1	0.193	0.529	1.107	threading_9	-------------------------------------------------------------------------TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTGQIEGAVSSSDASTEKLKSL-GIHVF--------------------DLNEVSLGIYVDGADEINGHQIKGGG-AALTREKIIASVAEKFICIADASKQ-------------VDIL-ANRGAD-----------VALIGTPDG
10	PPA-I	2w48B	0.128	0.980	1.285	threading_10	NSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGILKQKFGLAVVASSDGLL-----EEEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQSRQVICVPHVNTLTYGAAARLKAESHLADFPALLDNPLIRSQHFKTISSYWSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHRFYDLVDTNMSEKTLSIEMAKLRQARYSIGIAMGESGILGALHGRYINCLVTNRE

Predicted Tertiary Structure


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TM-score=0.594 to 2gnpA SCOP code=c.124.1.8	TM-score=0.649 to 2gnpA SCOP code=c.124.1.8	TM-score=0.634 to 1uj5A SCOP code=c.124.1.4	TM-score=0.679 to 2gnpA SCOP code=c.124.1.8	TM-score=0.613 to 2nrcB SCOP code=c.124.1.3