Template-based Modeling Results for YGAP_ECOLI

Submitted Primary Sequence

>Length 174
MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLPVAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCGMARLLDKMPWNQRA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLPVAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCGMARLLDKMPWNQRA
CCCCCCCHHHHHHHHHCCCEEEECCCHHHHHCCCCCCCEECCHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLPVAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCGMARLLDKMPWNQRA
552321223202300332010010221221235102301001121013221323243120000010021002001200321212100002200100241112022343321212110010000000000000100100010000000000000000000000000120122343
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLPVAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCGMARLLDKMPWNQRA
1	MUSTER	3tp9A3	0.280	0.575	2.019	threading_1	--YANVSPDEVRGALAQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAH-IHDVPRDGSVCVYCRTGGRSAIAASLLRAH-GVGDVRNV-GGYEAWRGKGFPVEA---------------------------------------------------------------------
2	SPARKS	3gk5a	0.240	0.575	2.704	threading_2	--YRSINAADLYENI-KAYTVLDVREPFELIFGSIANSINIPISELREK-WKILERDKKYAVICAHGNRSAAAVEFLSQ-LGL-NIVDVEGGIQSWIEEGYPVVLE--------------------------------------------------------------------
3	PROSPECT2	2kl3A	0.202	0.684	2.051	threading_3	M-EPQSDAHVLKSRLEWGETILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLL-RSAGFEHVSELKGGLAAWKAIGGPTEGIIESRTP-----------------------------------------------------AGADDYNVV
4	PPA-I	1yt8A2	0.231	0.621	3.007	threading_4	--ADTIDPTTLADWLGEPTRVLDFTASANYAKRHIPGAAWVLRSQLKQAL-ERLGTAERYVLTCGSSLLARFAVAEVQALSG-KPVFLLDGGTSAWVAAGLPTEDGESLLID--------------------------------------------------------------
5	HHPRED-l	1gmx_A	0.190	0.603	2.199	threading_5	MDFECINVADAHQKLQKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMR-DNDFDTPVMVM-YHGNSSKGAAQYLLQ-QGYDVVYSIDGGFEAWQRQ-FPAEVAYGA-----------------------------------------------------------------
6	HHPRED-g	1gmx_A	0.190	0.603	1.921	threading_6	MDFECINVADAHQKLQEEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAF-MRDNDFDTPVMVM-YHGNSSKGAAQYLLQ-QGYDVVYSIDGGFEAWQRQ-FPAEVAYGA-----------------------------------------------------------------
7	SP3	3gk5a	0.240	0.575	2.433	threading_7	--YRSINAADLYENI-KAYTVLDVREPFELIFGSIANSINIPISELREK-WKILERDKKYAVICAHGNRSAAAVEFLSQ-LGL-NIVDVEGGIQSWIEEGYPVVLE--------------------------------------------------------------------
8	SAM-T99	3tp9A3	0.270	0.575	2.789	threading_8	--YANVSPDEVRGALAQQLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHIHDVP-RDGSVCVYCRTGGRSAIAASLLRAHGVG-DVRNV-GGYEAWRGKGFPVEA---------------------------------------------------------------------
9	MUSTER	3gk5A	0.240	0.575	2.008	threading_9	--YRSINAADLYENI-KAYTVLDVREPFELIFGSIANSINIPISELREK-WKILERDKKYAVICAHGNRSAAAVEFLSQL-GL-NIVDVEGGIQSWIEEGYPVVLE--------------------------------------------------------------------
10	SPARKS	2kl3a	0.211	0.655	2.687	threading_10	ME-PQSDAHVLKSRLEWGETILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRS-AGFEHVSELKGGLAAWKAIGGPTEGIIESRTPHHHH----------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.692 to 1gn0A SCOP code=c.46.1.3	TM-score=0.807 to 1yt8A SCOP code=c.46.1.2	TM-score=0.670 to 1gn0A SCOP code=c.46.1.3	TM-score=0.679 to 1gn0A SCOP code=c.46.1.3	TM-score=0.778 to 1yt8A SCOP code=c.46.1.2