Template-based Modeling Results for YFJV_ECOLI

Submitted Primary Sequence

>Length 338
RALFTWKVLLGAAVDALFANDGAALILTPIVIAMLIALGFSQGTTLAFVMAAGFIADTASLPLIVSNLVNIVSADFFGLSFAQYASVMISVDAAAIAATLIMLYLFFRRVIPATYXVSLLKTPASAIKDLATFRAGWIVLLLLLVGFFFLEPQGILVSAIAAAGAAVLFVVAKRGHSINTGKVLRGAPWQIVIFSLGMYIVVYGLRNAGFTEYLSGVLNLLADKGLWAATFGTGFLTAFLSSVMNNMPTVLIGALSIDGSTATGVVKEAMIYANVIGCDLGPKITPIGSLATLLWLHVLAQKNMTITWGYYFRTGIVMTVPVLFVTLAALAWRLSVTL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
RALFTWKVLLGAAVDALFANDGAALILTPIVIAMLIALGFSQGTTLAFVMAAGFIADTASLPLIVSNLVNIVSADFFGLSFAQYASVMISVDAAAIAATLIMLYLFFRRVIPATYXVSLLKTPASAIKDLATFRAGWIVLLLLLVGFFFLEPQGILVSAIAAAGAAVLFVVAKRGHSINTGKVLRGAPWQIVIFSLGMYIVVYGLRNAGFTEYLSGVLNLLADKGLWAATFGTGFLTAFLSSVMNNMPTVLIGALSIDGSTATGVVKEAMIYANVIGCDLGPKITPIGSLATLLWLHVLAQKNMTITWGYYFRTGIVMTVPVLFVTLAALAWRLSVTL
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
RALFTWKVLLGAAVDALFANDGAALILTPIVIAMLIALGFSQGTTLAFVMAAGFIADTASLPLIVSNLVNIVSADFFGLSFAQYASVMISVDAAAIAATLIMLYLFFRRVIPATYXVSLLKTPASAIKDLATFRAGWIVLLLLLVGFFFLEPQGILVSAIAAAGAAVLFVVAKRGHSINTGKVLRGAPWQIVIFSLGMYIVVYGLRNAGFTEYLSGVLNLLADKGLWAATFGTGFLTAFLSSVMNNMPTVLIGALSIDGSTATGVVKEAMIYANVIGCDLGPKITPIGSLATLLWLHVLAQKNMTITWGYYFRTGIVMTVPVLFVTLAALAWRLSVTL
51100000000000000011100000000000000210212322000000000000101000010111100000100101002000000000000000000000000031022220222242212212121001000000000000000121110210000000000000003223222102003202020000000000001002200012000000010133021000000000000001001101000000100211112211210000000000100210000000000000200332412010010010000000000000000000212123
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	RALFTWKVLLGAAVDALFANDGAALILTPIVIAMLIALGFSQGTTLAFVMAAGFIADTASLPLIVSNLVNIVSADFFGLSFAQYASVMISVDAAAIAATLIMLYLFFRRVIPATYXVSLLKTPASAIKDLATFRAGWIVLLLLLVGFFFLEPQGILVSAIAAAGAAVLFVVAKRGHSINTGKVLRGAPWQIVIFSLGMYIVVYGLRNAGFTEYLSGVLNLLADKGLWAATFGTGFLTAFLSSVMNNMPTVLIGALSIDGSTATGVVKEAMIYANVIGCDLGPKITPIGSLATLLWLHVLAQKNMTITWGYYFRTGIVMTVPVLFVTLAALAWRLSVTL
1	PROSPECT2	1ejlI	0.104	0.994	1.722	threading_1	EDIVKGILQATQAARKLLSREIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTGGAIPAFISLLASPH--AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLQILPTLVRLLHHNDPEVLADSCWAISYLTDGPKKGVVPQLVKLLELPIVTPALRAIGQTQKVIDAGALAVFTWTMSNITAGRQDQIQQVVNLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMGGLDKIEALQVYKASLNLIEKYFS
2	PROSPECT2	1jdha	0.104	0.994	1.662	threading_2	HAIMRSPQMVSAIVRTMQNTNDVETARC-TAGTLHNLSHHREGLLAIFSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLDINVVTCAAGILSNKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILIQRVAAGVLCELAQD
3	PROSPECT2	3a6pA1	0.069	0.944	1.638	threading_3	AMRHFGLQILEHVVKFRWNSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVV-----------EMIKREWPQHDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTSKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLL------LNEQELQLGAAECLLIAVSRKPLMVLFGDVAMHYILSAAQTACALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRD--PLLLAIIPKYLRASMTNLSCEYSRFDFDS
4	PROSPECT2	1ee4a	0.100	0.976	1.630	threading_4	QELPQMTQQLLSATVKFRQRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS-----GTSAQTKVVVDADALFIQLLYTGSVEVKEQAIWALGNVRDYVLQCNAMEPILGLFNSNKPSLPDWSVVSQALPTLTLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALCWTISNITAGNTEQIQAVIDLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLVTLDALENILKMGEADKEARGLNINENADFGGMEKIFNCQEKAYKIIETY---F
5	PROSPECT2	1xm9A	0.103	0.976	1.552	threading_5	PKAVQYLSYQAIGAYYIQHSAKQQVYQLGGICKLVDLLRSPN--------QNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLIQKQLTGLLWNLSLKEELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNASDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGIARLLQSGNSDRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAAEAARLLLSDMWL
6	SPARKS	2xwub	0.065	0.994	0.758	threading_6	VPLQDCEALIQAAFAA-LQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVGDMETSHGICRIAVALGEHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYVNETFEAEKQAVYQQVYRPVYFQLVDVLLHKADEEYGFWFRIYRVDISDTLMYVYEMLGAELKLGRLLTSYSWHTEALLYGFQSIAETINYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISP-
7	PROSPECT2	3a0oA3	0.103	0.891	1.498	threading_7	GRSARHAAALSAFADAVAKDPNHCGWAEFYEKSVEPWLERPVMPEPQPYPNN-------------TRVATLWRQM-----YIDCQEVIYAIRHLAIAGRVLASRKWLLAVAAWDTKGATSRAYN------DEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIALQGESAGEWLDYTVEFLAAEGPHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTTLGDLPGLKLGYNVRQFAGVTGN----GHYQWYFDHIKADATGTEMAFYNYGWWDL---------NFDDLVYRHDYPQ
8	PPA-I	3g61A1	0.089	0.926	0.884	threading_8	DRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTT----YAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIWFDVHDV------------GELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRIGQVLTVFF---SVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAM-----KKAHVFGITFSFTQAMMYFSYAACFRFGAYL-
9	HHPRED-l	1q16_C	0.096	0.583	0.533	threading_9	-------------------------------------------------------------------------------QFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQ------MLDRKGMNLASNLFHIGILGIFVGHFFGWLPMAGASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCAL-----GLLTIPFS----AQHMDGSEMMKLVGWAQSVV---TFH--------GGA--SQHLDGVA-FIFRLHLVLGMTLFLLFPFSRPVEYLTR-----KYQLVRARH----------------------------
10	HHPRED-g	2nwl_A	0.113	0.861	0.531	threading_10	-YPVILIGILGAIVGLILGHAAVHTYVKPFGDLFVRLLKML---VMPIVFASLVAVTLGIIMARLFNPGAGIH-----PPLVHILLDIVPTNPFGALIILGIAITYLMNSENEKVRK-----SAETLL--D-AINGLAEAMYKIVNGV---MQYAPIGVFALIAYV----MAEQG----V----HV--VGELAKVTAAVYVGLTLQILL---VYFVLL-KIYGIDPISFIKHAAMLTAFVTR-----SSSGTL-PVMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVC--TFFIANALGSHLTVGQQLTIVLTAVLASIGTAAIAMVLH-SVGL

Predicted Tertiary Structure


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TM-score=0.408 to 2qypB SCOP code=a.64.1.1	TM-score=0.773 to 1ialA SCOP code=a.118.1.1	TM-score=0.808 to 1t5jA SCOP code=a.209.1.1	TM-score=0.700 to 1ialA SCOP code=a.118.1.1	TM-score=0.441 to 1sziA SCOP code=a.24.23.1