Template-based Modeling Results for YFJI_ECOLI

Submitted Primary Sequence

>Length 469
MFNGRPFPVDAFPKIIRNAIYEVEQHTQAPQGLIAASALGVISLACQNRIDVCRLNNLRGPVSLFLMTLAESGERKSTVDKLLMKPLYQLEEDLFEKYTHDLTAWRNDEAIFNIEKKALMSKLKSDIRRNKDHLATNERLKELLTTNPKAPVRFKFLFNDATPAAIKAHLCGHWRSVGIMSDEAGIIFNGYTLNELPFINKMWDGSIFTVERKNEPEKLIRDARITLSLMVQPNVFKGYIDRKGDMAKGIGFFARCLMCQPASTQGNRKISNPIFSNEHLPVFHQRLMEIVNESIIKINENNRICLRFSAEAERHWIEFYNQVESEMRMIGLLYDFKDYASKMAENMARLAALLHYFSGDGGDISVTAVKAAVEIVAWYIEEYIRLFSKKEEFSLDVSEADELYCWIKDYCTQKFSSCIKKNIILQFGPNKFRNRDKANELIRILISQNKIFISSWGKTKIINITHCVF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFNGRPFPVDAFPKIIRNAIYEVEQHTQAPQGLIAASALGVISLACQNRIDVCRLNNLRGPVSLFLMTLAESGERKSTVDKLLMKPLYQLEEDLFEKYTHDLTAWRNDEAIFNIEKKALMSKLKSDIRRNKDHLATNERLKELLTTNPKAPVRFKFLFNDATPAAIKAHLCGHWRSVGIMSDEAGIIFNGYTLNELPFINKMWDGSIFTVERKNEPEKLIRDARITLSLMVQPNVFKGYIDRKGDMAKGIGFFARCLMCQPASTQGNRKISNPIFSNEHLPVFHQRLMEIVNESIIKINENNRICLRFSAEAERHWIEFYNQVESEMRMIGLLYDFKDYASKMAENMARLAALLHYFSGDGGDISVTAVKAAVEIVAWYIEEYIRLFSKKEEFSLDVSEADELYCWIKDYCTQKFSSCIKKNIILQFGPNKFRNRDKANELIRILISQNKIFISSWGKTKIINITHCVF
CCCCCCCCHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCCEEEECCEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFNGRPFPVDAFPKIIRNAIYEVEQHTQAPQGLIAASALGVISLACQNRIDVCRLNNLRGPVSLFLMTLAESGERKSTVDKLLMKPLYQLEEDLFEKYTHDLTAWRNDEAIFNIEKKALMSKLKSDIRRNKDHLATNERLKELLTTNPKAPVRFKFLFNDATPAAIKAHLCGHWRSVGIMSDEAGIIFNGYTLNELPFINKMWDGSIFTVERKNEPEKLIRDARITLSLMVQPNVFKGYIDRKGDMAKGIGFFARCLMCQPASTQGNRKISNPIFSNEHLPVFHQRLMEIVNESIIKINENNRICLRFSAEAERHWIEFYNQVESEMRMIGLLYDFKDYASKMAENMARLAALLHYFSGDGGDISVTAVKAAVEIVAWYIEEYIRLFSKKEEFSLDVSEADELYCWIKDYCTQKFSSCIKKNIILQFGPNKFRNRDKANELIRILISQNKIFISSWGKTKIINITHCVF
5531421213000300220021014213013000000000000000212010112331300000000000312433110021012002301320133023102112212210211231002213332443333210131033123233322222200022001100111012122100000110010021111211100020121220202142333210210100000002230020003331321421000000000002223222312322123310210131012002200331433322002002301310120022013203422212102200020020001000001002132130222002000200100021001001333312221110120011012102331221021210121022313333102300300132220011222222001002124
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFNGRPFPVDAFPKIIRNAIYEVEQHTQAPQGLIAASALGVISLACQNRIDVCRLNNLRGPVSLFLMTLAESGERKSTVDKLLMKPLYQLEEDLFEKYTHDLTAWRNDEAIFNIEKKALMSKLKSDIRRNKDHLATNERLKELLTTNPKAPVRFKFLFNDATPAAIKAHLCGHWRSVGIMSDEAGIIFNGYTLNELPFINKMWDGSIFTVERKNEPEKLIRDARITLSLMVQPNVFKGYIDRKGDMAKGIGFFARCLMCQPASTQGNRKISNPIFSNEHLPVFHQRLMEIVNESIIKINENNRICLRFSAEAERHWIEFYNQVESEMRMIGLLYDFKDYASKMAENMARLAALLHYFSGDGGDISVTAVKAAVEIVAWYIEEYIRLFSKKEEFSLDVSEADELYCWIKDYCTQKFSSCIKKNIILQFGPNKFRNRDKANELIRILISQNKIFISSWGKTKIINITHCVF
1	SPARKS	1fnna	0.097	0.751	1.194	threading_1	VVDDSVFSPSYVPKRLEQQLQQLDILL---------------GNWLRN------PGH--HYPRATLL--GRPGTGKTVTLRKLWELYKD------------------------------KTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEF-LALLVEHLRERDLYMFLVLDDAFNL-------APDILSTFI--------RLGQEADKLGAFRIALVIVGNDAVLNNLDPSTRGIMGK------------------YVIRFSPYT-------KDQIFDILLDRAKAGLAEGS----YSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ---------NGRKHIAPEDVRKSSKEV--LFGISEEVLIGLP------LHEKLFLLAIVRSLKISHTPYITFGDAEESYGERPRVHSQLWSYLNDLREKGIVETRQNTTLISIGTEPTLE
2	PROSPECT2	2qenA	0.114	0.712	1.681	threading_2	MLDLRPKTRREDEEESRKLEESLENYP-------------------------------------LTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRK------------------LSLREVFRELGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY------AYDSLPNLKI------ILTGSEVGLLHDFLKITDYESPLYG-------------------------------------------------RIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRR----------RSPRYVDILRAIA-----LGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDN----TYKIADPVV
3	SP3	1fnna	0.107	0.757	1.259	threading_3	VVDDSVFSPSYVPKRL------------PHREQQLQQLDILLGNWL--------RNPGHHYPRATLL--GRPGTGKTVTLRKLWELYKDKTTARFVYI--------------------------NGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEF-----LALLVEHLRERDLYMFLVLDDAFNLA-------PDILSTFI--------RLGQEADKLGAFRIALVIVGNDAVLNNLDPS---------TRGIM---------GKYVIRFSPYT-------KDQIFDILLDRAKAGLAEGS----YSEDILQMIADITGAQTPLDTNRGD--------ARLAIDILYRSAYAAQQNG-RKHIAPEDVRKSSKEV--LFGISEEVLIGLP------LHEKLFLLAIVRSLKISHTPYITFGDAEESYGERPRVHSQLWSYLNDLREKGIVETRQNTTLISIGTEPLLE
4	SPARKS	1w5sa	0.113	0.757	1.148	threading_4	FKDRRVFDENYIPGEAEALARIYLNRLL--------------------------SGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYV--------------------------ENHYLLVILDEFQSMLSSPRIA-AEDLYTLLR-------VHEEIPSRDGVNRIGFLLVADVRALSYMREKIPQVE---------------SQIGFKLHLPAYK--------SRELYTILEQRAELGLRDTV----WEPRHLELISDVYG---EDKGGDGSARRAIVALKMACEMAEA---------MGRDSLSEDLVRKAVSENTIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKP-------------RGYTQYHIYLKHLTSLGLVDAKPSTT--LFRLAPHLP
5	PROSPECT2	2fnaA	0.129	0.712	1.679	threading_5	LFDTSPKDNRKDFFDREKEIEKLKGLRAP-----------------------------------ITLVLGLRRTGKSSIIKIGINELNLIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPS--------------LLKALKNIQGIVIGNEIKFNRLSFANLLESFEQAKDNVIIVLDEAQELVKLRGVNLLPALAYAYD----------------NLKRIKFISGSEGLLYDY---------------------------LRVEDPESPL-----------------------FGRAFSTVELKPFSREEAIEFLRRGFQEADDFKDYEVVYEKIGGIPGWLTYFGFIYLDNKN-----LDFAINQTLEYAKKLILKEFENFLHGR---------EIARKRYLN--IRTLSKCGKWSDVKRALEGIEISDSEIYNYLTQLTKHSWIIKEGEK----YCPSEPLI
6	SP3	2qbya	0.129	0.746	1.232	threading_6	FINREYLLPDYIPDELPHREDQIRKIASI------------LAPLYRE------------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL------------------------LESLDVKVPFTGLSIAEL-----YRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINS----------------EVNKISFIGITN---DVKFVDLLDPRVKSSLSEEEIIF--------------PPYN-------AEELEDILTKRAQMAFKPGV----LPDNVIKLCAALAA------REHGD--------ARRALDLLRVSGEIAERMK-DTKVKEEYVYMAKEEIERDRVRDIIL-----TLPFHSKLVLMAVVSISVSTTGAVYET--YLNICKKLGVEAVTQRRVSDIINELDMVGILTAKVYGKTKEIGLADKVR
7	SPARKS	2qbya	0.134	0.733	1.097	threading_7	FINREYLLPDYIPDELEDQIRKIAS---------------ILAPLYRE----EKPNN--------IFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQ--------------------------VVIVLDEIDAFVKKYNDDILYKLSRINSEV---------------NKISFIGITNDVKFVDLLDPRVKSSLSE------EEIIFPPYN-------------------AEELEDILTKRAQMAFKPGV----LPDNVIKLCAALAA------REHGDARRALDLLRVSGEIAER---------MKDTKVKEEYVYMAKEEIERDRVRDIIL-----TLPFHSKLVLMAVVSISVSTTGAVYE--TYLNICKKLGVEAVTQRRVSDIINELDMVGILTAKRYGKTKEIGLA---V
8	PROSPECT2	1jdha	0.084	0.940	1.523	threading_8	AVVNLIRAIPELQVVVNKAAVMVHQLSKKEASRHAIMMVSAIVRTMQN-------TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPADSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYELKVLSVCSSNKPAIVEAGGMQALGLHLTDPSSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILVHNRIVIRGLNTIPLFVQLLYNIQRVAAGVLCELAQDKEAAEAIEAEGATAPRNEGVATYAAAVLFRMS--------------------
9	SP3	2v1ua	0.111	0.748	1.126	threading_9	FRKRWVLLPDYVPDVLPHREAELRRLAEV------------LAPALRGEK----------PSNALL--YGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA---------------------RHRETPYRVASAIAEAVGVRVPFTGLSVGEV-----YERLVKRLSRLRGIYIIVLDEIDFLPK--RPGGQDLLYRITR---------------INQELVSLVGITNS-----------LGFVEN-LEPR-----VKSSLGEVELVFPPYT---APQLRDILETRAEEAFNPGV--------LDPDVVPLCAALAA------REHGD--------ARRALDLLRVAGEIAERRR-EERVRREHVYSARAEIERDRVSEVVR-----TLP---LHAKLVLLSIMMLEDGGRPASTRYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVVSRGKTREVSLDAD
10	SPARKS	2v1ua	0.100	0.744	1.091	threading_10	FRKRWVLLPDYVPDVLPHREAELRRLAEVLAPAL---------------------RGEKPSN---ALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN---------------------ARHRETPYRVASAIAEAVGVRVPFTGLSVGEV-----YERLVKRLSRLRGIYIIVLDEIDFLPKR--PGGQDLLYRITR---------------INQELVSLVGITNSLGFVENLEPRVK-----------------SSLGEVELVFPPYT-------APQLRDILETRAEEAFNPGV----LDPDVVPLCAALAA------REHGDARRALDLLRVAGEIAER---------RREERVRREHVYSARAEIERDRVSEVVR-----TLPLHAKLVLLSIMMLE-----DGGRPASTGEIYERYGLEHVTLRRVSGIISELDMLGIVKSRVVSYGKTREVSLDAD

Predicted Tertiary Structure


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TM-score=0.841 to 1w5tB SCOP code=a.4.5.11	TM-score=0.804 to 1fnnA SCOP code=a.4.5.11	TM-score=0.720 to 2fnaA SCOP code=a.4.5.11	TM-score=0.806 to 1fnnA SCOP code=a.4.5.11	TM-score=0.851 to 2ooeA SCOP code=a.118.8.7