Template-based Modeling Results for YFIF_ECOLI

Submitted Primary Sequence

>Length 345
MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
553323242231322122233323332333422322243232323222322333331324343233222322232323322332332222232223332244342321101001001100333222001001132123302300210243412021023210231122322100000012231220320023122310000012121120000000001102020000131012210100101210021020010220220021035110100001133232012021312000000223420132022102010201021301000000000000011123335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
1	MUSTER	1gz0F	0.257	0.699	2.485	threading_1	-------------------------------------------------------------------------------------------------SSGLVPRGSHSEIYGIHAVQALLERAPERFQEVFILKGRDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLILDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPDRSAQLNATAKKVACGAAESVPLIRVTNLART--RLQEENIWIVGTAGEADHTLY--QSKTGRLALVGAEGEG-RRLTREHCDELISIPA-GSVSSLNVSVATGICLFEAVRQRS-
2	SPARKS	3nk6a	0.126	0.733	4.696	threading_2	---------------------------------------------------------------------------------TEPAIITNASDPAVQRIIDVTKHSKTTLIEDTEPLMECIRAGVQ-FIEVYGSSGTPLD-PALLDLCRQREIPVRLIDVSIVNQL-----FAKVFGIARVPRPARLADIAER---GGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVSDLATIARRLLRASRGYVFSLPVVLA-DREEAVSFLRDNDIALMVLDTDGDLGVKDLDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSARNFA
3	PROSPECT2	3gyqA	0.152	0.742	3.733	threading_3	----------------------ANPSDPAVQRIIDVTKPSRSNIK-------------------------------------------------------------TTLIEDVEPLMHSIAA-GVEFIEVYGSDS-SPFPSELLDLCGRQNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIAS---RRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILDSDITSIDRRLQRASRGYVFSLPVVLS-GREEAIAFIRDSGMQLMTLKADGDISVKELDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVSLGIALHERIDRNLA
4	PPA-I	1gz0F	0.257	0.699	3.766	threading_4	-------------------------------------------------------------------------------------------------SSGLVPRGSHSEIYGIHAVQALLERAPERFQEVFILKGRDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLILDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPDRSAQLNATAKKVACGAAESVPLIRVTNLART--RLQEENIWIVGTAGEADHTL--YQSKTGRLALVGAEGEG-RRLTREHCDELISIPA-GSVSSLNVSVATGICLFEAVRQRS-
5	HHPRED-l	1gz0_A	0.270	0.667	5.023	threading_5	----------------------------------------------------------------------------------------------------------SE-IYGIHAVQALLERAPERFQEVFILKGRDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLSLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDSAQLNATAKKVACGAAESVPLIRVTNLART---LQEENIWIVGTAGEADHTLYQSK-TGRLALV-GAEGEG-RRLTREHCDELISIP-AGSVSSLNVSVATGICLFEAVRQRS-
6	HHPRED-g	1gz0_A	0.275	0.664	4.454	threading_6	----------------------------------------------------------------------------------------------------------SE-IYGIHAVQALLERAPERFQEVFILKGRDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYDLPDLIAS-LDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPDRSAQLNATAKKVACGAAESVPLIRVTNLART---LQEENIWIVGTAGEADHTLYQSK-TGRLALV-GAEGEG-RRLTREHCDELISIP-AGSVSSLNVSVATGICLFEAVRQRS-
7	SP3	3nk6a	0.126	0.733	4.843	threading_7	---------------------------------------------------------------------------------TEPAIITNASDPAVQRIIDVTKHSKTTLIEDTEPLMECIRAGVQ-FIEVYGSSGTP-LDPALLDLCRQREIPVRLIDVSIVNQL-----FAKVFGIARVPRPARLADIAER---GGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVSDLATIARRLLRASRGYVFSLPVVLA-DREEAVSFLRDNDIALMVLDTDGDLGVKDLDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSARNFA
8	SAM-T99	1gz0F	0.270	0.667	6.227	threading_8	-----------------------------------------------------------------------------------------------------------SEIYGIHAVQALLERAPERFQEVFILKGREDRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIADQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSQLNATAKKVACGAAESVPLIRVTNLART--RLQEENIWIVGTAGEADHTLYQSK-TGRLALV-GAEGEG-RRLTREHCDELISIP-AGSVSSLNVSVATGICLFEAVRQR--
9	MUSTER	3gyqA	0.168	0.742	2.439	threading_9	-----------------------------------------------------------------------------------ANPSDPAVQRIIDVTKPSRSNIKTTLIEDVEPLMHSIAAGVE-FIEVYGSDS-SPFPSELLDLCGRQNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASR---RGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSITSIARRLQRASRGYVFSLPVVLS-GREEAIAFIRDSGMQLMTLKADGDISVKELDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVSLGIALHERIDRNLA
10	SPARKS	3gyqa	0.164	0.742	3.692	threading_10	-----------------------------------------------------------------------------------ANPSDPAVQRIIDVTKPSRSNIKTTLIEDVEPLMHSIAAG-VEFIEVYGSDS-SPFPSELLDLCGRQNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIAS---RRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSTSIADRRLQRASRGYVFSLPVVLS-GREEAIAFIRDSGMQLMTLKADGDISVKELDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVSLGIALHERIDRNLA

Predicted Tertiary Structure


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TM-score=0.785 to 1gz0F SCOP code=c.116.1.1	TM-score=0.787 to 1gz0F SCOP code=c.116.1.1	TM-score=0.712 to 1ipaA SCOP code=c.116.1.1	TM-score=0.681 to 1gz0F SCOP code=c.116.1.1	TM-score=0.792 to 1gz0F SCOP code=c.116.1.1