Template-based Modeling Results for TRMN6_ECOLI

Submitted Primary Sequence

>Length 245
MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAGVKRCLDIGAGSGLLALMLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHTADIQQWITQQTVRFDLIISNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFSDRLVIRGPDQNYSEAYTALTQAFYLFM
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAGVKRCLDIGAGSGLLALMLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHTADIQQWITQQTVRFDLIISNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFSDRLVIRGPDQNYSEAYTALTQAFYLFM
CCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAGVKRCLDIGAGSGLLALMLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHTADIQQWITQQTVRFDLIISNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFSDRLVIRGPDQNYSEAYTALTQAFYLFM
55322211221100222000123310120101000000002122221000000000000000023033211010010223001101200331312210100001022003323220000000011034223121132121312220201100200130033300000000220020002003212131200010133433201000010023334222320001233331030002002201113
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAGVKRCLDIGAGSGLLALMLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHTADIQQWITQQTVRFDLIISNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFSDRLVIRGPDQNYSEAYTALTQAFYLFM
1	MUSTER	3lpmA	0.160	0.869	2.361	threading_1	LKLIGD-ERLDYLLAENLRIIQSPSVFSFSIDAVLLAKFSYLIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQ-ERLADAKRSVAYNQLEDQIEIIEYDLKKITDLIPERADIVTCNPP----------------------TLEDTIRVAASLLKQGGKANFVHRPERLLDIIDI-RKYRLEPKRIQFVHPRSDREANTVLVEGIKDPGVKYVPPVIVYDELGEYTPVIKEILYG-----
2	SPARKS	3lpma	0.156	0.865	3.232	threading_2	LIGD---ERLDYLLAENLRIIQSPSVFSFSIDAVLLAKFSYLPRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLAD-AKRSVAYNQLEDQIEIIEYDLKKITDLIPERADIVTCNPP---------------------CTLEDTIRVAASLLKQGGKANFVHRPERLLDIID-IRKYRLEPKRIQFVHPRSDREANTVLVEGIKDPGVKYVPPVIVYDELGEYTPVIKEILYG-----
3	PROSPECT2	3lpmA	0.153	0.878	3.292	threading_3	KLKLIGDERLDYLLAENLRIIQSPSVFSFSIDAVLLAKFSYLIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLAD-AKRSVAYNQLEDQIEIIEYDLKKITDLIPERADIVTCNPPCT---------------------LEDTIRVAASLLKQGGKANFVHRPERLLDIID-IRKYRLEPKRIQFVHPRSDREANTVLVEGIGKPGVKYVPPVIVYDELGEYTPVIKEILYG-----
4	PPA-I	3lpmA	0.160	0.865	3.008	threading_4	LIGD---ERLDYLLAENLRIIQSPSVFSFSIDAVLLAKFSYLPRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQ-ERLADAKRSVAYNQLEDQIEIIEYDLKKITDLIPERADIVTCNPP---------------------CTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIR-KYRLEPKRIQFVHPRSDREANTVLVEGIKKPGVKYVPPVIVYDELGEYTPVIKEILYG-----
5	HHPRED-l	2ozv_A	0.196	0.751	2.017	threading_5	-------------------------------DA-LLASLVADDRACRIADLGAGAGAAG-AVAARL-EKAEVTLYERSQE-AEFARRSLELPAFSARIEVLEADVTLRAKLPDEHFHHVI-NPPY--------------------GLFEDWIRTASAI-VSGGQLSLISRPQSVAEIIAACGSR-FGGLEITLIHPRPGEDAVR-LVTAIKGSRLTFRAPLI-HETGSHFTPFVDDLNNGRAAY-
6	HHPRED-g	2ozv_A	0.195	0.755	2.561	threading_6	-------------------------------DA-LLASLVADDRACRIADLGAGAGAAG-AVAARLE-KAEVTLYERSQE-AEFARRSLELPAFSARIEVLEADVTLRAKLPDEHFHHVI-NPPY--------------------GLFEDWIRTASAI-VSGGQLSLISRPQSVAEIIAACGSR-FGGLEITLIHPRPGEDAVR-LVTAIKGSRLTFRAPLI-HETGSHFTPFVDDLNNGYARNV
7	SP3	3lpma	0.154	0.873	3.617	threading_7	LKLIGD-ERLDYLLAENLRIIQSPSVFSFSIDAVLLAKFSYLPRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLAD-AKRSVAYNQLEDQIEIIEYDLKKITDLIPKRADIVTCNPPC---------------------TLEDTIRVAASLLKQGGKANFVHRPERLLDIID-IRKYRLEPKRIQFVHPRSDREANTVLVEGIKKPGVKYVPPVIVYDELGEYTPVIKEILYG-----
8	SAM-T99	3lpmA	0.153	0.878	3.521	threading_8	KLKLIGDERLDYLLAENLRIIQSPSVFSFSIDAVLLAKFSYLIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLAD-AKRSVAYNQLEDQIEIIEYDLKKITDLIPERADIVTCNPP---------------------CTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIR-KYRLEPKRIQFVHPRSDREANTVLVEGIKKPGVKYVPPVIVYDELGEYTPVIKEILYG-----
9	MUSTER	2ozvB	0.172	0.759	1.549	threading_9	-------------------------------DALLAS-LVADDRACRIADLGAGAGAAGAVAARL--EKAEVTLYERSQE-AEFARRSLELAAFSARIEVLEADVTLRAKARPDEHFHHVINPPY---------------------LFEDWIRTASAIV-SGGQLSLISRPQSVAEIIAACGS-RFGGLEITLIHPRPGEDA-VRLVTAIKGARLTFRAPLIHETGSHAFTPFVDDLNNGYARNV
10	SPARKS	1nv8a	0.168	0.824	1.954	threading_10	GYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRGIKTVADIGTGSGAIGVSVAKFS--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDTVF-------LKDSAGK--YRFLLLNRRSS--------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.715 to 1dusA SCOP code=c.66.1.4	TM-score=0.725 to 1dusA SCOP code=c.66.1.4	TM-score=0.728 to 1dusA SCOP code=c.66.1.4	TM-score=0.698 to 1dusA SCOP code=c.66.1.4	TM-score=0.723 to 1dusA SCOP code=c.66.1.4