Template-based Modeling Results for YFFS_ECOLI

Submitted Primary Sequence

>Length 269
MSYEIKICDILKGAAMEGQYKGAQRGAKCEEIANELTRRGVKNNKGEVITKGGVSHWLEGRREPNFDTLAELCDMFGVYALMPMRGGKWIRVHPEDRGEMELREAVAERDAIIDDLKARIAELEAALANKQVPAEAEEMGGEKVEEVAAEQAPNDEKEMGAKEWVNPNPKKYSVGMLCQVLAAMGGEYLGNNAGLQQKITVLDNDGNRKPISNGAFYRLIEQAKGRGLISVEQEIKHKKDENGNQIGKGKKGDKLITLLPNWIDKLGDE
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSYEIKICDILKGAAMEGQYKGAQRGAKCEEIANELTRRGVKNNKGEVITKGGVSHWLEGRREPNFDTLAELCDMFGVYALMPMRGGKWIRVHPEDRGEMELREAVAERDAIIDDLKARIAELEAALANKQVPAEAEEMGGEKVEEVAAEQAPNDEKEMGAKEWVNPNPKKYSVGMLCQVLAAMGGEYLGNNAGLQQKITVLDNDGNRKPISNGAFYRLIEQAKGRGLISVEQEIKHKKDENGNQIGKGKKGDKLITLLPNWIDKLGDE
CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSYEIKICDILKGAAMEGQYKGAQRGAKCEEIANELTRRGVKNNKGEVITKGGVSHWLEGRREPNFDTLAELCDMFGVYALMPMRGGKWIRVHPEDRGEMELREAVAERDAIIDDLKARIAELEAALANKQVPAEAEEMGGEKVEEVAAEQAPNDEKEMGAKEWVNPNPKKYSVGMLCQVLAAMGGEYLGNNAGLQQKITVLDNDGNRKPISNGAFYRLIEQAKGRGLISVEQEIKHKKDENGNQIGKGKKGDKLITLLPNWIDKLGDE
55221310200200023131312332030320021014311323312111310011102133222131002001000010000032020020023362213023000212111221211012021112323221322422233022001330333133111331111223311000001000111031012311121101002432222212201012002203431101012303234233123113133121000001212142234
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSYEIKICDILKGAAMEGQYKGAQRGAKCEEIANELTRRGVKNNKGEVITKGGVSHWLEGRREPNFDTLAELCDMFGVYALMPMRGGKWIRVHPEDRGEMELREAVAERDAIIDDLKARIAELEAALANKQVPAEAEEMGGEKVEEVAAEQAPNDEKEMGAKEWVNPNPKKYSVGMLCQVLAAMGGEYLGNNAGLQQKITVLDNDGNRKPISNGAFYRLIEQAKGRGLISVEQEIKHKKDENGNQIGKGKKGDKLITLLPNWIDKLGDE
1	MUSTER	1uyqA	0.192	0.911	1.070	threading_1	I-FQ-FPQDFMWGTATAAQIEGAQEDGRGLSIWDTFAHTPGKVFNG---DNGNVACDSYHRYEEDIRLMKEL-------GIRTYRSVSWPRIFPNGDGEVN-QEGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQALQDAGGWGNRRTIQAFVQTMFREFHIQHWLTFNE---------PWCIAFLSNMLGVHAPGLTNLQTAIDVGHHLLVAHGLSVRRFRELGTSGQIGIAPNVSWAVPYSTSEEDK-AACARTISLHSDWFLQ-GSY
2	PROSPECT2	2xheA3	0.119	0.877	1.213	threading_2	LFIPKHLVRRLSTLCTTMNRYSSTSTPGTERMAMQLQKEIDMSVSQGLINARDRAVDLKSPLVHESSTIDSCTKAEQNIVTEEEQDGN------KVRDFIGEVASVVVDRRVSTEDKLRCLMLCVLAKNG--------TSSHELNNLLDNANIATPSR-----------------SAIYNLEMLGATVVADRRGRKPKTMKRIERDMPYVLSTPIVKDLMEYIATGQLD--LESYPAVRDGPSVVQPKESAKPKLFVFISGYLVSLLDK
3	HHPRED-l	2b5a_A	0.221	0.286	1.267	threading_3	MINEIEIKRKF-GRT--LKKIRTQKGVSQEELADLAG-----------LHRTYISEVERGDRNISLINIHKICAALDIPASTFFR------------------KM--EEEN--------------------------------------------------------------------------------------------------------------------------------------------------------------
4	HHPRED-g	2b5a_A	0.208	0.286	1.228	threading_4	MINEIEIKRKFGRTLK---KIRTQKGVSQEELADLAG-----------LHRTYISEVERGDRNISLINIHKICAALDIPASTFF------RKMEEEN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	MUSTER	1qoxP	0.204	0.911	1.047	threading_5	-SIHMFPSDFKWGVATAAQIEGANEDGRGMSIWDTFAHTPGKVKNG---DNGNVACDSYHRVEEDVQLLKDL--------VKVYRSISWPRVLPQGTGEVN-RAGLDYYHRLVDELLANGIEPFCTLYHWDLPQALQDQGGWGSRITIDAFAELMFKELGIKQWITFNE---------PWCMAFLSNYLGVHAPGNKDLQLAIDVSHHLLVAHGRAVTLFRELGISGEIGIAPNTSWAVPYRRTKEDM-EACLRVNGWSGDWYLD-GEY
6	PROSPECT2	1k77a	0.104	0.892	1.184	threading_6	SFTEVPFIERFA-AARKAGFDLFPYNYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEA-HADIDLALEYALALNCEQVHVAGVVPAGE-------DAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGVKP---HYLFSSQYQALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGWLFRLFDEVGYQGWIGCE----YKPRGLTEEGL-------------GWFDAWRGS
7	HHPRED-l	3qwg_A	0.174	0.342	1.244	threading_7	----TTFAARLN-RLFDTVYPPGRGPHTSAEVIAALKAEG------ITMSAPYLSQLRSGNRNPSGATMAALANFFRIKAAYFT------------------DDEYYEK------LDKEL-QWLCTMR---------------------------------------------------------------------------------------------------------------------------------------------
8	HHPRED-g	3op9_A	0.170	0.394	1.013	threading_8	--IQHQFAENLSRLKKEHG-------LKNHQIAELLN-----------VQTRTVAYY-SGETKPDIEKLIRLATYFHLSIDELVGYVQE------VWNDLSLKQWLLSLNLRSEEEIAKIKILVDTVET---------------------LYPN-------------------------------------------------------------------------------------------------------------------
9	MUSTER	1od0B	0.180	0.911	1.011	threading_9	MASNVKPEGFLWGVATASQIEGSLADGAGMSIWHTFSHTPGNVKNG---DTGDVACDHYNRWKEDIEIIEKL--------VKAYRSISWPRILPEGTGRVN-QKGLDFYNRIIDTLLEKGITPFVTIYHWDLPFALQLKGGWANREIADWFAEVLFENFGVKNWITLNE---------PWVVAIVGHLYGVHAPGMRDIYVAFRAVHNLLRAHARAVKVFRET-VDGKIGIVFNNGYFEPASEKEEDI-RAVRFMHQFNNPLFLN-GDE
10	PROSPECT2	1oyzA	0.096	0.929	1.157	threading_10	ASKEYGLYNQCKKLNDDERLLDDHNSLKRISSARVLQLRGGQD---------AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNNNALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNV---RRATAFAISVIATIPLL--INLLKDPNGD-----VRNWAAFAININKYDNSDIRDCFVELQDKNEEVYRKDKRVLSVLCDELKKNTVYDDEAAGELGDKTLLPVLDTLYKFDDNEIITSAIDKLKRS

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.708 to 1uyqA SCOP code=c.1.8.4	TM-score=0.571 to 1epuA SCOP code=e.25.1.1	TM-score=0.604 to 2b5aA SCOP code=a.35.1.3	TM-score=0.622 to 2b5aA SCOP code=a.35.1.3	TM-score=0.709 to 1qoxP SCOP code=c.1.8.4