Template-based Modeling Results for YFER_ECOLI

Submitted Primary Sequence

>Length 308
MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCEAILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGISILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGREGDPLYQI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCEAILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGISILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGREGDPLYQI
CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCEEHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCEAILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGISILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGREGDPLYQI
54121310100000043210120034011000101200330042121200111212010030022002202400210220031014114322020100001000010003001201440130101012212320020033130000000111323202000002130000014301002332011310231200002220001100120034121212000101201000100211100000010013123220000222222120200001123321020021002002210220132332232334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCEAILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGISILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGREGDPLYQI
1	MUSTER	3fxrA	0.210	0.945	2.980	threading_1	M-LKLQTLQALICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHARLIVTESRRAQEEIGQLRGRWEGHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDTDLEAQPLYVSDVVIVGQRQHPMANAT--RLAELQECRWAFSSAPRGPGAIIRNAFARYGLPPKLGLVCESFLALPGVVAHSDLLTTMPRTLYERFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHAL--------------
2	SPARKS	1iz1a	0.193	0.942	5.191	threading_2	--MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASSIVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEK-QPPILARFVEHVRRSA---------------
3	PROSPECT2	1iz1a	0.197	0.942	4.835	threading_3	M--EFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASSIVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQ-PPILARFVEHVRRSA---------------
4	PPA-I	3fxrA	0.206	0.945	5.316	threading_4	-MLKLQTLQALICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHARLIVTESRRAQEEIGQLRGRWEGHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDTDLEAQPLYVSDVVIVGQRQHPMANATRLA--ELQECRWAFSSAPRGPGAIIRNAFARYGLPPKLGLVCESFLALPGVVAHSDLLTTMPRTLYERFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHAL--------------
5	HHPRED-l	1ixc_A	0.191	0.916	3.393	threading_5	---EFRQLKYFIAVAEAGN-AAAAKRLHVSQPPITRQ-QALEADLGVVLLE-----IELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTH-TKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGPSFADEVIGLFKHAGIEPRIARVVEDATAALALT-AGAASSIVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEK-QPPILARFVEHVRRSAKD-------------
6	HHPRED-g	1al3_A	0.172	0.718	2.959	threading_6	---------------------------------------------------------------------------------------TWPDKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEAHLYDDLVMLPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDVSDPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLDTAVALRSNEDIEAM
7	SP3	1iz1a	0.193	0.942	5.514	threading_7	--MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASSIVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEK-QPPILARFVEHVRRSA---------------
8	SAM-T99	3fzvB	0.229	0.909	3.472	threading_8	-SYTLRQLKYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGVQLFS-------LTPAGARFYRKAQELLRAHEFEQNALAD-NDVIAGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDSTIETEPLPPQRPHALLPEGHRFAGQAQVSLRDLCLEPILLDVQPS--RTYFVSLFEELGLTPNIAFSSPSIE--VRGVGQGFGFSLLVTRPHSECTYGKKVVVDLAPVSTSGLAAAWLKRAQLTKPARLFVDYCREQL---------------
9	MUSTER	1iz1B	0.192	0.948	2.862	threading_9	--MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASSIVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQ-PPILARFVEHVRRSAKD-------------
10	SPARKS	3fxra	0.210	0.945	5.047	threading_10	M-LKLQTLQALICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHARLIVTESRRAQEEIGQLRGRWEGHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDTDLEAQPLYVSDVVIVGQRQHPMANAT--RLAELQECRWAFSSAPRGPGAIIRNAFARYGLPPKLGLVCESFLALPGVVAHSDLLTTMPRTLYERNADQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHAL--------------

Predicted Tertiary Structure


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TM-score=0.672 to 2esnC SCOP code=a.4.5.37	TM-score=0.669 to 2fyiC SCOP code=c.94.1.1	TM-score=0.810 to 1iz1B SCOP code=a.4.5.37	TM-score=0.812 to 1iz1B SCOP code=a.4.5.37	TM-score=0.677 to 2esnC SCOP code=a.4.5.37