Template-based Modeling Results for YFEH_ECOLI

Submitted Primary Sequence

>Length 332
MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIALLFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGFLYLCILPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGSLEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLSFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIALLFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGFLYLCILPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGSLEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLSFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIALLFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGFLYLCILPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGSLEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLSFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA
43112011000000000000010012413102002000000000000010030223000100110201000000000000000000021222202210000000000011101000000110202100000000001000000000000001212121011310020011000000002001200120022023001100100000000000020022111341120000000000000000000000000330202421100000000321101000001100222210100000000100000000000310221133243333232444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIALLFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGFLYLCILPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGSLEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLSFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA
1	MUSTER	3zuxA	0.162	0.913	2.821	threading_1	I-SSFIGKTFSLWAALFAAAAFFAPDTFKWAGP---YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN--LPAEIAVGVILVGCCPGG-TASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKI------MESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPV--VAVPGALFSVWHNISGSLLATYWAAKA--------------
2	SPARKS	3zuxa	0.164	0.916	4.542	threading_2	LSSSFIGKTFSLWAALFAAAAFFAP---DTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN--LPAEIAVGVILVGCCPGGT-ASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKI------MESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAA--PVVAVPGALFSVWHNISGSLLATYWAAKA--------------
3	PROSPECT2	3zuxA	0.168	0.916	3.192	threading_3	NISSFIGKTFSLWAALFAAAAFFAPDTF---KWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN--LPAEIAVGVILVGCCPGGTASNV-MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKI------MESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAA--PVVAVPGALFSVWHNISGSLLATYWAAK--------------A
4	PPA-I	3zuxA	0.161	0.916	4.966	threading_4	KISSFIGKTFSLWAALFAAAAFFAPDTFKWAGP---YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN--LPAEIAVGVILVGCCPGG-TASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKI------MESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPV--VAVPGALFSVWHNISGSLLATYWAAKA--------------
5	HHPRED-l	3zux_A	0.162	0.913	11.243	threading_5	-NILSKGKTFSLWAALFAAAAFFAPDTFKWAG---PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN--LPAEIAVGVILVGCCPGGTASNV-MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIM--E----SGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAA--PVVAVPGALFSVWHNISGSLLATYWAAKA--------------
6	HHPRED-g	3zux_A	0.168	0.916	10.234	threading_6	KISSFIGKTFSLWAALFAAAAFFAPDTFKWAG---PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN--LPAEIAVGVILVGCCPGGTASNV-MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGK-IME-----SGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAA--PVVAVPGALFSVWHNISGSLLATYWAAKA--------------
7	SP3	3zuxa	0.161	0.916	7.116	threading_7	LSSSFIGKTFSLWAALFAAAAFFAP---DTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN--LPAEIAVGVILVGCCPGGT-ASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES------GLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAA--PVVAVPGALFSVWHNISGSLLATYWAAKA--------------
8	SAM-T99	3zuxA	0.168	0.916	8.059	threading_8	KISSFIGKTFSLWAALFAAAAFFAP---DTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN--LPAEIAVGVILVGCCPGGTASNV-MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGA------SKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAA--PVVAVPGALFSVWHNISGSLLATYWAAKA--------------
9	MUSTER	2fozA	0.109	0.913	0.844	threading_9	MA---SLSRFRGCLAGALLGDCV-FYEAALYYTDDTAMARALVQSLLAKE-AFDEVDMAHRFAQEYKKDP-----RGYGAGVVTVFKKLLNPKCRDVFEPARAQKGSYGNGGAMRVAGISLAYSSQKFARLSAQLASSLGYNGAILQALAVHLALQGESSSEHFLKQLLGHMEDLEGDAQSVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELGNGIAAFESVPTAIYCFLRCMEPDPEIPSAFNS--LQRTLIYSISLGGD--IATMAGAIAGAYYGMDQVPESWQQSCEGYEETDILAQSLHRVFQKS---------------
10	SPARKS	3hfwa	0.074	0.931	0.811	threading_10	LQDGEKIHRQLAQLGG---LDALDVGRWRV--SDDTVMHLATAEALVEAGKAPKLTQLYYLLAKHYQDCMEDMDGRAPGGASVHNAMQLKPGKPNGWRAMRAMCIGLRFPHHSQLDTLIQVSI--ESGRMTHHHPTGYLGALASALFTAYAVNSRPPLQWGKGLMEL-----LPEAKKYIVQS--GYFVEENLQHWSYFQTKWENYLKLRGILDGESAPTFPESFGVKERDQFYTSLSYGHDAPMIAYDAVLAAGDSWKELAHRAFFHGGDTAAIAGCWWGVMYGFKGVSP--------SNYEKLEYRNRLEETARALYSLGSKEDTVISL-

Predicted Tertiary Structure


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TM-score=0.426 to 2r2vA SCOP code=h.1.3.1	TM-score=0.425 to 1cpcB SCOP code=a.1.1.3	TM-score=0.421 to 1j30A SCOP code=a.25.1.1	TM-score=0.423 to 2r2vA SCOP code=h.1.3.1	TM-score=0.427 to 1cpcB SCOP code=a.1.1.3