Template-based Modeling Results for YFDV_ECOLI

Submitted Primary Sequence

>Length 314
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS
21210011000000000000000123102330030002000100000000000030223101200210000000000000000000121132232100000000001110000000000011221000000000000000000000000011122232432210100010021000000000000000103002101200200020000000000000000220110020000000100000000000000030222101000000000100000000131212130000000000000000000000002115
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS
1	MUSTER	3zuxA	0.117	0.949	1.318	threading_1	IISSFIGKTFSLWAALFAAAAFFAPDTFKW-----AGPY-IPWLLGIIMFGMGLTLKFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGG--TASNVMTYLARGN-VALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE---IQAAGMLMSIVK-MVLLPIVLGLIVHKV---LGSKTEKLTDALPLVSVAAIVLIIGAVVGASKMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA
2	SPARKS	3zuxa	0.093	0.959	1.217	threading_2	ILSKISSFIGKTFSLWAALFAAAAF--FAPDTFKWAGPY-IPWLLGIIMFGMGLTLKFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTA--SNVMTYLARGN-VALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMV----LLPIVLGLIVHKV---LGSKTEKLTDALPLVSVAAIVLIIGAVVGKGKIMEGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA
3	PROSPECT2	3a6pA1	0.083	1.000	1.664	threading_3	ICVPCGLIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANVEMIKREWPQHWPDMLIELDTLSKETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKESKAQANCRVGVAALNTLAGYIDWVAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCAGKYLESFLAFTTHPSQFLRSSTQLAIIPKYLRASMYSRFDFDSDEDFNAFFVMRLACRLDPKTSFQMAGEWLK
4	PPA-I	3zuxA	0.123	0.959	1.447	threading_4	KISSFIGKTFSLWAALFAAAAFFAPDTFKWAGP------YIPWLLGIIMFGMGLTLKPDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGG--TASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAG----EMLEIQAAGMLMSIVK-MVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA
5	HHPRED-l	3zux_A	0.162	0.471	4.517	threading_5	-----------------------------------------------------------------------------------------------------------------------------------------------------------------NILSKISSFIGKTFSLWAALFAAAAF---FAPDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDIPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGE-
6	HHPRED-g	3zux_A	0.161	0.475	5.855	threading_6	-----------------------------------------------------------------------------------------------------------------------------------------------------------------NILSKISSFIGKTFSLWAALFAAAAFF---APDTFKW-AGPYIPWLLGIIMFGMGLTLKPSDFDIHKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEM
7	SP3	3zuxa	0.103	0.959	0.712	threading_7	ILSKISSFIGKTFSLWAALFAAAAF--FAPDTFKWAGPY-IPWLLGIIMFGMGLTLKFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGC-CPGGTASNVMTYLARGN--VALSVAVTSVSTLTSPLLTPAIFLMLA---GEMLEIQAAGMLMSIVK-MVLLPIVLGLIVHKV---LGSKTEKLTDALPLVSVAAIVLIIGAVVGKGKIMEGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA
8	SAM-T99	3zuxA	0.097	0.857	1.293	threading_8	-FKWAGPYIPWLLGIIMFGMGLTLK-----------------------------PSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPNV------MTYLARGNVALSVAVT--SVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLG-------SKTEKLTDALPLVSVAAIVLIIGAVVGASKGKISLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA
9	MUSTER	2fozA	0.132	0.965	0.853	threading_9	MLSRFRGCLAGALLGDCVGSFYEAHDTVDTSVLRHVQSLEDDTAMARALVQSLLAKEAFDEVDMAHRFAQEYKKDRGYGAGVVTVFKKLLNPKCRDVFEPARAQFYGNGGAMRVAGISLAYSSVQDVQKFARLSAQLSLGYNGAILQALAVHL-QGESSSEHFLKQLLGHMEDLEAQSVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELGNGIAAFESVPTAIYCFLRCMEPDPEIPSAFNSL----QRTLIYSISLTDTIATMAGAIAGAYYGMDESWQQSC------GYEETDILAQSLHRVFQ
10	SPARKS	1pw4a	0.081	0.981	0.842	threading_10	DLGFALSGISIAYGFSIMGSVSDRSN-----PRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRWSPTYLKEVKHFLDKSSWAYFLYEYAGIPGTLLCGWMSDKRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD

Predicted Tertiary Structure


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TM-score=0.430 to 1pv6A SCOP code=f.38.1.2	TM-score=0.431 to 2r2vA SCOP code=h.1.3.1	TM-score=0.428 to 2q7nB SCOP code=a.26.1.1	TM-score=0.599 to 1oyzA SCOP code=a.118.1.16	TM-score=0.432 to 2r2vA SCOP code=h.1.3.1