Template-based Modeling Results for YFDN_ECOLI

Submitted Primary Sequence

>Length 164
MSMSLLNDVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTHRHFPRLTERAQDPEPQPVRETRPVRNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSMSLLNDVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTHRHFPRLTERAQDPEPQPVRETRPVRNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
CCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSMSLLNDVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTHRHFPRLTERAQDPEPQPVRETRPVRNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
52221022012003112201011002102202323013001302200200130213211000222330333323224323222202112212200100131032034211111002000200321223322220111122003313421212210001122246
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSMSLLNDVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTHRHFPRLTERAQDPEPQPVRETRPVRNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
1	HHPRED-l	2k4b_A	0.138	0.396	1.068	threading_1	NVSNAELIVMRVIWSLGEARVDEIYAQIPQWSLATVKTLLGRLVKKEMLSTEKEGRKFVYRPLME---------------------------------------------------------------------------------------------------
2	HHPRED-g	2jt1_A	0.246	0.396	1.006	threading_2	MSESIVTKIISIVQERAPVKTRDIADAAGL-SIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWRLLE--------------------------------------------------------------------------------------------------
3	HHPRED-l	1p6r_A	0.162	0.451	1.036	threading_3	QISDAELEVMKVIWKHSSINTNEVIKELSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDES---DYIEV--KS-------------------------------------------------------------------------------------
4	HHPRED-g	2k4b_A	0.154	0.396	1.005	threading_4	FNVSNALIVMRVIWSLGEARVDEIYAQIPQWSLATVKTLLGRLVKKEMLSTEKEGRKFVYRPLME---------------------------------------------------------------------------------------------------
5	MUSTER	3iuvA	0.109	0.951	0.854	threading_5	RRQRIIDAAIRVVGQK-GLSHRTVAAE-ADVPLGSTTYHATLVAALRQANEGFAR-----VVAAHPALSDPEADLSGELARVLGEWLGGDRTGVELEYELYLAALRRPAVAAEWAEGVGALLAARTDPTTARALVAVLDGICLQVTDTPYDEEYA-VLTRLIPV
6	SPARKS	1bia_	0.135	0.951	0.782	threading_6	MKNTVPLKLIALLANGEFHSGEQLGETL-GMSRAAINKHIQTLRDWGV---DVFTVPGKGY-SLPEPIQLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSSP---FGANLYLSMFWRLEQPAAAIGLSLVIGIVMAEVRKLGADKNDLYLQDRKLAG
7	PROSPECT2	2imdA	0.081	0.909	0.823	threading_7	IVYLANQRLSKLAQDYGLIDLARVKIAIGNVGPSNRDLKVKLDYLKVDLQRWAQ-----------LYGIPLVFPANYNSRRNIGFYYSGAEAQAAAYVNVVFNAVWGEGVSEKLGWDRSAFEHFLSSNAATERYDEQTHAAIE----RKVFGVPTFLGDEWWGS
8	PPA-I	1hlvA	0.130	0.701	0.791	threading_8	LTFREKSRIIQEVEENPDLRKGEIARRF-NIPPSTLSTILKNKRAILASERKY-----------------------GVASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGILKEKALRIAEELGMDDSNGWLDRFRRRRS-------------------------
9	HHPRED-l	2g9w_A	0.128	0.665	0.937	threading_9	RLGDLERAV-DHLWSRTPQTVRQVHEALSDLAYTTV-AVLQRLAKKNLVLQIR---AHRYAPVHGRDE---LVA-------------------------GL-VDALAQAEDSGSRQAALVHFVERVGADEADALRRALAE-LEA--------------------
10	HHPRED-g	1p6r_A	0.176	0.451	0.821	threading_10	MKKDAELEVMKVIWKHSSINTNEVIKELSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDE---SDYIEV-KS--------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.538 to 1ucrB SCOP code=a.4.5.45	TM-score=0.556 to 1lvaA SCOP code=a.4.5.35	TM-score=0.652 to 1p6rA SCOP code=a.4.5.39	TM-score=0.519 to 1lvaA SCOP code=a.4.5.35	TM-score=0.760 to 2np5A SCOP code=a.4.1.9