Template-based Modeling Results for GTRB_ECOLI

Submitted Primary Sequence

>Length 306
MKISLVVPVFNEEEAIPIFYKTVREFEELKSYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHATGDAIIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRDVVENIKLMPERNLFMKGILSWVGGKTDIVEYVRAERIAGDTKFNGWKLWNLALEGITSFSTFPLRIWTYIGLVVASVAFIYGAWMILDTIIFGNAVRGYPSLLVSILFLGGIQMIGIGVLGEYIGRTYIETKKRPKYIIKRVKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKISLVVPVFNEEEAIPIFYKTVREFEELKSYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHATGDAIIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRDVVENIKLMPERNLFMKGILSWVGGKTDIVEYVRAERIAGDTKFNGWKLWNLALEGITSFSTFPLRIWTYIGLVVASVAFIYGAWMILDTIIFGNAVRGYPSLLVSILFLGGIQMIGIGVLGEYIGRTYIETKKRPKYIIKRVKK
CEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKISLVVPVFNEEEAIPIFYKTVREFEELKSYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHATGDAIIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRDVVENIKLMPERNLFMKGILSWVGGKTDIVEYVRAERIAGDTKFNGWKLWNLALEGITSFSTFPLRIWTYIGLVVASVAFIYGAWMILDTIIFGNAVRGYPSLLVSILFLGGIQMIGIGVLGEYIGRTYIETKKRPKYIIKRVKK
210000000111230022003002301443322010000011152101100210142132000000122112200000001302010000010113111300120021122201000001123222120220002001100010031302221010100112003103302321200200011010201102011132222313120210010001000100110120010000000000000000000100011321310000000000000000000000010002002213522211012136
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKISLVVPVFNEEEAIPIFYKTVREFEELKSYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHATGDAIIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRDVVENIKLMPERNLFMKGILSWVGGKTDIVEYVRAERIAGDTKFNGWKLWNLALEGITSFSTFPLRIWTYIGLVVASVAFIYGAWMILDTIIFGNAVRGYPSLLVSILFLGGIQMIGIGVLGEYIGRTYIETKKRPKYIIKRVKK
1	MUSTER	3ckqA	0.190	0.843	1.409	threading_1	RTISVVLPALDEEDTIGSVIDSISPLVD--GLVDELIVLDSGSTDDTEIRAVAAGARSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPPMFVPWLVGPLLTGGVHLVKSFYRRPLGGRVTELVARPLLAALRPELG-CILQPLGGEYAATRELLTSVPFAPGYGVEIGLLVDTFGLAIAQVNLGVREHRNRPLA-ELGAMSRQVIATLLSRCGIP---------------------------DSGVGL---------------TQFVADGPEGSYTQHTWPVLADRPP--MQAIRP
2	SPARKS	3f1ya	0.147	0.892	2.990	threading_2	LTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRDRPQLAYGVLGPVLEGVRFVKAAYRRPEEDGVTELTAKPLFNLFYPELAG--FVQPLAGEFVADRELFCSIPFLTGYAVETGIMIDVLVGLGAMAQVDLGERQNRHQHLRLSRMSYAVVRAVARRLRQEGRLQQLRE-----PGLPESFFQLSDYLHAVATPEG------------------------LKLQEYVELVERPP--INEVLR
3	PROSPECT2	2bo4A	0.166	0.944	2.504	threading_3	S--LVVFPFKHEHPEV---LLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPETGTPVSVRLGTLRPGKNTALRYFLEETQWERIHFYDADITSFPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMTRTGFALLWPHTELSWIEQPLGGELLMRREVAAMLYEDERVRRLYTFVTVQQGVSIYECYI--PEGKAHRLYGGLDDLRTMLVECFAAIHWTPRQVELLELFTTPVREGLRMAWAATYHVLLEHFQPGDPDWEELLFKLWTTRVLAQQYLYRMLGRYRYQAA----------LE
4	PPA-I	3ckqA	0.187	0.716	2.639	threading_4	RTISVVLPALDEEDTIGSVIDSISPLV--DGLVDELIVLDSGSTDDTEIRAVAAGARSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPPMFVPWLVGPLLTGGVHLVKSFYRRPLGGRVTELVARPLLAALRPELG-CILQPLGGEYAATRELLTSVPFAPGYGVEIGLLVDTFLDAIAQVNLGVREHRN----RPLAELGAMSRQVIATLLIRPR--------------------------------------------------------------------------------
5	HHPRED-l	2bo4_A	0.181	0.922	3.911	threading_5	---SLVVPFKHEHP---EVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITFGPDWITKAEEAADFGYGLVRHYFPRASTDAMTWMITRTGFALLWPHTELSWIEQPLGGELLMRREVAAMLYEDESDDTLYTFVTVQQGVSIYECYIPAHRLYGG-LDDLRTMLVECFAAIQSLQHWVELLELVREGLRTCEMAWAATYHVLLEH--FQPGDPDWEELLF-KLWTTRVLNYLYRMLGRYRYQAALE--------------
6	HHPRED-g	2bo4_A	0.178	0.935	4.112	threading_6	---SLVVFPFKHEH--PEVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEIQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFALWPHTELSWIEQPLGGELLMRREVAAMLYED-ERVRRRSDVTVQQGVSIYECYYGHRQEIAERVGYDVEATLHRLMQHWTPRQV-ELLEPVREGLRTCQREMAWAATYHVLLEHFQPGDPDWEEL-LFKLWTTRVLNYTMTVAQQYLYRMLGRYE------------
7	SP3	3e25a	0.206	0.794	2.716	threading_7	RTISVVLPALNEEATIESVIDSISPLVD--GLVDELIVLDSGSTDDTEIRAIASGARSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPPLFVPWLVGPLLTGEGIQLVKSFYRRVTELVARPLLAALRPEL-----GCVLQPLSGEYAASRELLTSLPFAPEIGLLIDTFDRLGLDAIAQVNLGVRNRPLDEL----GAMSRQVIATLLSRCGIPD---SGVGL-----------------TQFYTRHT-WP----------------------------VSLVDRPPM---KVMR
8	SAM-T99	3bcvA	0.207	0.614	2.384	threading_8	PKVSVIVPIYNVEKYLDQCVQALLAQTL---SDIEIILIDDESPDNCPKICDDYAAQYPNIKVIH-KKNAG-LGACNSGLDVATGEYVAFCDSD-----------------------------------DYVDSDYTYNVAQKYTCDAV------------FTFKLYKNKNEIHTLLKDLI-------ASDPYAREERA--------------------------------IQVSAKVVLYRRNLIEKKHLRFVSERILPSEDLIFNVDVLANSNIVCV---------------------------
9	MUSTER	3f1yA	0.167	0.882	1.332	threading_9	LTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAESENELMSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRDRPQLAYGVLGPVLEGVRFVKAAYR-RPEEDGGGRVTELTAKPLFNLFYPAGFVQPLAGEFVADRELFCSIPFLTETGIMIDVLKKVGLGAMAQVDLGE--RQNRHQH--LRDLSRMSYAVVRAV--RRLRQEGRL----------------LREPGLPESFFQLSDYLHAVATPEGLKL-----------QEYVEELVRPP--INEVLR
10	SPARKS	3e25a	0.206	0.712	2.950	threading_10	RTISVVLPALNEEATIESVIDSISPLVDGLVD--ELIVLDSGSTDDTEIRAIASGARSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPPLFVPWLVGPLLTGEGIQLVKSFYRRVTELVARPLLAALRPEL-----GCVLQPLSGEYAASRELLTSLPFAPGYGLLIDTFDRLGLDAIAQVNLGVRNRPLDELGAMSRQVIATLLSGLTQFVMRP---------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.676 to 2bo8A SCOP code=c.68.1.18	TM-score=0.672 to 2bo8A SCOP code=c.68.1.18	TM-score=0.676 to 2bo8A SCOP code=c.68.1.18	TM-score=0.810 to 2bo8A SCOP code=c.68.1.18	TM-score=0.664 to 2bo8A SCOP code=c.68.1.18