Template-based Modeling Results for YFDC_ECOLI

Submitted Primary Sequence

>Length 310
MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKAEARQKAERAENIKKNYKNPA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKAEARQKAERAENIKKNYKNPA
CCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKAEARQKAERAENIKKNYKNPA
5543424333332333233333222232233313230210021022201331323010000000000000000000100010203212001000000000000000002111012000000000123220120020010000000000000000000011011123301200020012113120010001000000000000000012210100000000000000202000000000000001010200100000000000010000000000000010233223444232333233232243333434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKAEARQKAERAENIKKNYKNPA
1	MUSTER	3klyC	0.227	0.752	2.502	threading_1	----------------------------------------------TGEGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPVTKLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISW---KELVRNWTVVYFGNLCGSIILVFIMLATRQFMGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKDLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYLK----------------------------
2	SPARKS	3klya	0.221	0.745	6.910	threading_2	-----------------------------------------------GEGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPVTKLLGGLAFSLGLILVVITGGELFTSSVLIL-VAKASGKI--SWKELVRNWTVVYFGNLCGSIILVFIMLATRQFGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKDLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYL-----------------------------
3	PROSPECT2	3kcuA	0.177	0.729	3.006	threading_3	-----------------------------------------------------KHPLKTFYLAITAGVFISIAFVFYITATTGTGTMPFAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKASGRI---TWGQLAKNWLNVYFGNLVGALLFVLLMWLSGTANGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGRSDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVISHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLR----------------------------
4	PPA-I	3kcuA	0.181	0.729	4.225	threading_4	-----------------------------------------------------KHPLKTFYLAITAGVFISIAFVFYITATTGTGTMPMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKASGRIT---WGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYNGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGRSDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLR----------------------------
5	HHPRED-l	3kcu_A	0.173	0.729	9.082	threading_5	-----------------------------------------------------KHPLKTFYLAITAGVFISIAFVFYITATTGTGTMPFAKLVGGICFSLGLILCVVCGADLFTSTVLIV-VAKASGRI--TWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYNGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGRSDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLR----------------------------
6	HHPRED-g	3kcu_A	0.173	0.729	7.980	threading_6	-----------------------------------------------------KHPLKTFYLAITAGVFISIAFVFYITATTGTGPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLI-VVAKASGRI--TWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYNGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGRMDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVISHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLR----------------------------
7	SP3	3klya	0.225	0.745	7.165	threading_7	-----------------------------------------------GEGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPVTKLLGGLAFSLGLILVVITGGELFTSSVLILV-AKASGKI--SWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKDLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYL-----------------------------
8	SAM-T99	3klyC	0.216	0.748	7.546	threading_8	-----------------------------------------------GEGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYTKLLGGLAFSLGLILVVITGGELFTSSVL-ILVAKASG--KISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFRSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYLK----------------------------
9	MUSTER	3kcuA	0.181	0.729	2.455	threading_9	-----------------------------------------------------KHPLKTFYLAITAGVFISIAFVFYITATTGTGTMPMAKLVGGICFSLGLILCVVCGADLFTS-TVLIVVAKASGRI--TWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGRSDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLR----------------------------
10	SPARKS	3q7ka	0.178	0.761	6.836	threading_10	-------------------------------------AAMAKVAEEAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTGAMPMAKLIGGICFSLGLILCVICGADLFTSTVLIV-VAKASGRI--TWGQLAKNWLNVYFGNLIGALLFVLLMWLSGEYNGQWGLNVLQTADHKMHHTFIEAVCLGILANLMVCLAVWMSYSGRSDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRHLTVMSFITDNLIPVTIGNIIGGGLLVGLTY----------------------------------

Predicted Tertiary Structure


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TM-score=0.621 to 2abmA SCOP code=f.19.1.1	TM-score=0.623 to 1ldfA SCOP code=f.19.1.1	TM-score=0.621 to 2abmA SCOP code=f.19.1.1	TM-score=0.609 to 2abmA SCOP code=f.19.1.1	TM-score=0.609 to 2abmA SCOP code=f.19.1.1