Template-based Modeling Results for YFCF_ECOLI

Submitted Primary Sequence

>Length 214
MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARARQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLVLGQPNLFGEWCIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARARQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLVLGQPNLFGEWCIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG
CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCEEEECCEEEECHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARARQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLVLGQPNLFGEWCIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG
5442201010122210100100000023230201111010322322331012102223000011230100100000100132023222330012113100102200110211001001100010011223423222301200230010012003213100012000000000000010211123013201200211231120130122114325
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARARQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLVLGQPNLFGEWCIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG
1	MUSTER	2v6kA	0.204	0.963	2.524	threading_1	---AKMKLYNF--WRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEWLEEQYPTP---ALLPADADGRQRVRALAAIVGCDIHPINNRRILEYLRKTFGADEINAWCGTWISAGFDAYEALLAVGRYSFGDTPTLADCYLVPQVESARRFQVDLTPLIRAVDAACGELDAFRRAAPAAQPDSA
2	SPARKS	2v6ka	0.204	0.963	3.152	threading_2	---AKMKLYN--FWRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEWLEEQYPTP---ALLPADADGRQRVRALAAIVGCDIHPINNRRILEYLRKTFGADAINAWCGTWISAGFDAYEALLAVGRYSFGDTPTLADCYLVPQVESARRFQVDLTPLIRAVDAACGELDAFRRAAPAAQPDSA
3	PROSPECT2	3bbyA	0.915	0.879	2.876	threading_3	--KPAITLWSDAHFFSPYVLSAWVALQEKGLSFHI------------------KTIDRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARARQIQAWLRSDLPIREERPTDVVF-AGAKKAPLTAEGKASAEKLFA-AEHLLVLGQPNLFGEWCIADTDLALIN-RLVLHGDEVPERLVDYATFQWQRASVQRFIALSAK---
4	PPA-I	2v6kA	0.218	0.963	2.410	threading_4	---AKMKLYNF--WRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEWLEEQYPTP---ALLPADADGRQRVRALAAIVGCDIHPINNRRILEYLRKGADEAAINAWCGTWISAGFDAYEALLAVGRYSFGDTPTLADCYLVPQVESARRFQVDLTPLIRAVDAACGELDAFRRAAPAAQPDSA
5	HHPRED-l	3bby_A	1.000	0.879	2.183	threading_5	--KPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTID------------------RVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARARQIQAWLRSDL-PIREERPTDVVFAGAKKAPLTAEGKASAEKLFA-AEHLLVLGQPNLFGEWCIADTDLAL-INRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAK---
6	HHPRED-g	3bby_A	1.000	0.879	1.742	threading_6	--KPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTID------------------RVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARARQIQAWLRSDL-PIREERPTDVVFAGAKKAPLTAEGKASAEKLFA-AEHLLVLGQPNLFGEWCIADTDLAL-INRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAK---
7	SP3	2v6ka	0.218	0.963	2.985	threading_7	---AKMKLYN--FWRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEWLEEQYPTP---ALLPADADGRQRVRALAAIVGCDIHPINNRRILEYLRKGADEAAINAWCGTWISAGFDAYEALLARGRYSFGDTPTLADCYLVPQVESARRFQVDLTPLIRAVDAACGELDAFRRAAPAAQPDSA
8	SAM-T99	1e6bA	0.231	0.869	2.352	threading_8	----KLKLY--SYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYLDEKYPEP---PLLPRDLHKRAVNYQAMSIVLSGIQPT-------------------AWVNNAITKGFTALEKLLVNCGKHATGEIYLADLFLAPQIHGAIRFQINMYPTLAKCYESYNELPAFQNALPEKQPDAP
9	MUSTER	3bbyA	0.963	0.874	2.463	threading_9	--KPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTID------------------RVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARARQIQAWLRSDL-PIREERPTDVVFAGAKKAPLTAEGKASAEKLFA-AEHLLVLGQPNLFGEWCIADTDLALINRLVLH--DEVPERLVDYATFQWQRASVQRFIALSAK---
10	SPARKS	2jl4a	0.206	0.953	3.103	threading_10	-----MKLYN--FWRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEWLEEQYPTP---ALLPADADGRQRVRALAAIVGCDIHPINNRRILEYLRKTFGADAINAWCGTWISAGFDAYEALLAVGRYSFGDTPTLADCYLVPQVESARRFQVDLTPLIRAVDAACGELDAFRRAAPAAQPDSA

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.861 to 1e6bA TM-score=0.768 to native SCOP code=a.45.1.1	TM-score=0.857 to 1e6bA TM-score=0.761 to native SCOP code=a.45.1.1	TM-score=0.857 to 1e6bA TM-score=0.763 to native SCOP code=a.45.1.1	TM-score=0.718 to 1tw9F TM-score=0.993 to native SCOP code=a.45.1.1	TM-score=0.863 to 1e6bA TM-score=0.766 to native SCOP code=a.45.1.1

Experimental Structure

Download 3bbyA

SCOP code=a.45.1.1