Template-based Modeling Results for YFCD_ECOLI

Submitted Primary Sequence

>Length 180
MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNAKNEAVETETAE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNAKNEAVETETAE
CCCCCCCCCCEEEEECCCCCEEEEEEHHHHCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCHHHEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNAKNEAVETETAE
554342222110000143321001021320233211010000001132110001211323311200000000111323231220012201320112222012001010214312100000000022312123310120000103101210340012012001100321243322334335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNAKNEAVETETAE
1	MUSTER	2fkbC	0.963	0.906	3.624	threading_1	-EQRRLASTEWVDIVNEENEVIAQASREQ-RAQCLRHRATYIVVHD-GGKILVQRRTETKDFLPGLD-ATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWKRN-------------
2	SPARKS	2pnya	0.206	1.000	3.861	threading_2	DRRQLQRLEEMLIVVDENDKVIGADTKRNCHEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAVRRAAQRRLQAELGIPGEDIVFMTIYHHKAKSDREICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLERETPWLRTIAERFLYRWWPHLDDVTPFVE
3	PROSPECT2	1q27A	0.281	0.928	2.972	threading_3	MGG---VSDERLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFTLSSFMCVYELRSDATPIFNPNDISGGEWLTPEHLLARIAAAAKGDLAELVRRCYRE----------EE
4	PPA-I	2fkbC	0.951	0.906	4.471	threading_4	-EQRRLASTEWVDIVNEENEVIAQASR-EQRAQCLRHRATYIVVHD-GGKILVQRRTETKDFLPGLD-ATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWKRN-------------
5	HHPRED-l	2fkb_A	1.000	0.872	3.700	threading_5	-------STEWVDIVNEENEVIAQASREQ-RAQCLRHRATYIVVHDG-GKILVQRRTETKDFLPG-LDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALW-KRN------------
6	HHPRED-g	2dho_A	0.169	0.983	4.863	threading_6	---QVQLLAEMCILIDENDNKIGAETKKNCHEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELRAAQRRLKAELGIPLEEINYLTRIHYKAQSEHEIDYILLVRMNVTLNPDPNEIKSYCYVSKEELKELLKKITPWFKIIAATFLFKWWDNLNHLNQFVD
7	SP3	2pnya	0.206	1.000	3.746	threading_7	DRRQLQRLEEMLIVVDENDKVIGADTKRNCHEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAVRRAAQRRLQAELGIPGEDIVFMTIYHHKAKSDREICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLERETPWLRTIAERFLYRWWPHLDDVTPFVE
8	SAM-T99	2fkbC	0.957	0.900	3.176	threading_8	-EQRRLASTEWVDIVNEENEVIAQASREQRAQ--LRHRATYIVVHDG-GKILVQRRTETKDFLPGL-DATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWKR--N-----------
9	MUSTER	1nfsB	0.185	0.933	3.123	threading_9	---------EHVILLNAQGVPTGTLEKYAAHADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYRYRATDPSGNEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDAFSPWMVMQATREARKRLSAFTQLKL---
10	SPARKS	2dhoa	0.164	0.983	3.852	threading_10	---QVQLLAEMCILIDENDNKIGAETKKNCHEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAVRRAAQRRLKAELGIPLEEINYLTRIHYKAQSDGEIDYILLVRMNVTLNPDPNEIKSYCYVSKEELKELLKKATPWFKIIAATFLFKWWDNLNHLNQFVD

Predicted Tertiary Structure


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TM-score=0.947 to 2fkbC TM-score=0.993 to native SCOP code=d.113.1.2	TM-score=0.944 to 2fkbC TM-score=0.990 to native SCOP code=d.113.1.2	TM-score=0.827 to 1nfsB TM-score=0.839 to native SCOP code=d.113.1.2	TM-score=0.936 to 1q27A TM-score=0.558 to native SCOP code=d.113.1.2	TM-score=0.946 to 2fkbC TM-score=0.992 to native SCOP code=d.113.1.2

Experimental Structure

Download 2fkbC

SCOP code=d.113.1.2