Template-based Modeling Results for YFCC_ECOLI

Submitted Primary Sequence

>Length 506
MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQEVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTSGSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSLGGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQGIAGVPVLSGSGLRIVVWVIATLIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQADVEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRLNGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAISGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFGDGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQLMGYH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQEVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTSGSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSLGGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQGIAGVPVLSGSGLRIVVWVIATLIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQADVEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRLNGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAISGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFGDGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQLMGYH
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCEEECCCCEEEECCCCCCCEEEECEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQEVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTSGSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSLGGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQGIAGVPVLSGSGLRIVVWVIATLIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQADVEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRLNGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAISGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFGDGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQLMGYH
55423333324422122110000000000000110022121201101120333343220013210201233213220220101222332211010002001212321200000000000000000011000011001000321343210000000000000000101021001000000000120110100000000000000000111110000001100302112000000000000000000000100120342322132231231134332323333121110000000000000000001112110210000000000000000000311212131002001200220000000000020000001213111100010001001100220230000000000100000002111010000000001002202022200000010010001000000000000000030203200200010000000000000000111224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQEVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTSGSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSLGGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQGIAGVPVLSGSGLRIVVWVIATLIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQADVEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRLNGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAISGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFGDGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQLMGYH
1	MUSTER	1u6gC	0.106	0.984	1.013	threading_1	LGHLVMSCFVKNDSMSTTRTYIQCIAAISRQAGHRIGLEKIIPLVVKFCNVDDDELREYCIQESFVRRCPKEVYPIINICLKYLTYDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFNVKADVFHAYLSLLKQTRPLTMLQSQVPNIVKALHKQMKESVKTRQCCFNMLTELVNVLPGANLKIDALSCLYVILCNHSPVFHPHVQALVPPVV-----ACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID-QEVKERAISCMGQIICNLGDNLGS-DLPNTLQIFLERLTRLTTVKALTLILKIDLRPVLGEGVPILASFLQRALKLGTLSALDILIKNYSDSTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNLGYMDLLRMLTGPVYYYSIAKCVAALTRAC-GPAVVGQFIQDVKNSR
2	SPARKS	2xwub	0.092	0.919	1.190	threading_2	IPLVLGLQERQAVQNGDMETSHGICRIAVALGENH-------SRALLDQVEHWQSFLALV--NMIMFCTGIPGHYPVNETTSLSFEAEKQAVYQQVYRPVYFFWSSDEKEQFRIYRVDISDTLMYVYEMELLSNLYDKLGRLLTSYSW--QHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISQLADTVMFTIGALSEWLAD--HPMINSVLPLVLHALGNPEL--------------SVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL----------QVEEILKNLHSLISPYIQQLEKLAEEIIVHILGLLSNLFTTLPVVVVLQQVFQLIQKVLSK-WLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLVKAVFQCAVLALKFP
3	PROSPECT2	1b3ua	0.081	0.949	2.281	threading_3	AAADGDDSLYDELRNEDVQLRLNSIKKLSTIALAL--------------------GVERTRSELLPFLTDTIYDELAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS-DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSLLAVEACVNIAQLEDLEALVMPTLRQAAEDKSWRVRYMGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCSVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVQLSQSLLPAIVELAEDAKWRVRLAIEKLNSLCMAWLVDHVYAIREAATSNLKKLVE-----KFGKEWAHATIIPKVLAMSGDPYLHRMTTLFCINVLSEVCGQDITTLPTVLRMAGDPVANVRFNVAKSLQKIGLQSEVKPILEKLTQDQ
4	PPA-I	1b3uA	0.078	0.885	1.201	threading_4	TTLVGGPEYVHCLTVEETVVRDKAVESLRAISHEH----------------SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ--------------------DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKS-------WRVRYMVA-------DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD---CRENVIMSQILPCIKELVSDASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF-----FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGVANVRFNVAKSLQKI
5	MUSTER	3gjxA	0.107	0.957	1.011	threading_5	VGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHTFISDIVGASRTSESLCQNNMV-KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLELLRFLNWIP-LGYITKLISTLIYKFLNVPMFRNVSLKCLTEIAGVSVYEEQFETLFTLTMMQLKQMLPLEQNFIQNLSLFLCTFLKEHG-----LLEKRLNLRE-ALMEALHYMLLVSTEIFKICLEYWNHLAAELYRESPFSTSAS------PLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVL-EVVREFDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNWKNLNTLCWAIGSISGAMHEDEKRFLVTVIKDLLGLCEQKRAIIASNIMYIVGQYPRFLRAH----WKFLKTVVNKLFEFMHETQDMACDTFIKIAQKCHFVQVQVGEVMPFIDEI---LNNINTIICDPQQVHTFYEAVGYMIGAQTDQT
6	SPARKS	2bkub	0.108	0.986	1.100	threading_6	LIFIKNNMEREGTQAEDIEVQAAAFGCLCKIMSKY--YTFMKPYMEQALYALTIATMKSPNDKVASMTVEEEEIDIAYELAQFPQSPLQSDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNGNHILEPVLEFVEQNITADNW-RNREAAVMAFGSIMDGPKVQRTYYVHQALPSILNLMNDQVKETTAWCIGRIADSVAESIDPHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLIYNFYPALVDGLIGAANRIDNEFNARASAFSEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN---SLEEDFRRYSDAMMNVLAQMISNPPAVLSVFGDIASNIGADFIPYLNDIMALCVAQNTKPEN-GTLEALDYQIKVLEAVLDAYVGIVAGLH
7	PROSPECT2	1jdha	0.097	0.895	2.168	threading_7	AVVNLIPELTKLLNDEDQVVVNKAAVMVHQLS------------------KKEASRHAIM---------------------------RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLREGLLAIFKSGGIPA----LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTKFLAITTDCLQILAYGNQESKSGGPQALVNIMRTYTYEKLLWTTSRVLKNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR--EDITEPAICALRHLEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQPIENIQRVAAGVLCAQDKEAAEAIEAEGATAPLTELLTYAAAVLFRMS
8	PPA-I	1kpkA	0.098	0.787	1.130	threading_8	-------------------------------------------------------------------------------------QAARLRRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAIPEIEGAPVRWWRVLPVKFFGGLGTLGGGVLGRIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFN-----------APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH--GGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFQYHLEAGTFAIAGMGALLAASIPLTGIILVLEMTDNYQ----------LILPMIITGLGATLLAQFTGGK
9	PROSPECT2	1qgra	0.065	0.996	2.060	threading_9	METLGTETYRPSSPNSTEHMKESTLEAIGYICQDIDPRKEEPSNNVKIMSLYYQYMETYMGPALFAITIEAMKSDIEAAEQGRPPEHTSKFYAKGALQYLVDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYSAYESLMEIVKNSAKDCYPAVQKTTVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYD--MVDYLNELRESCLEAYTGIVQGLKGDQENVQPRVEFILSFIDHIAVVACAAGLIGDLCNQA
10	PPA-I	1ialA	0.111	0.765	1.073	threading_10	-------------------------------------------------------------------------DEQMLKRRNVSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSRPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSEQTKAVVDGAIPAFISLPHAHISEQAVWALGNIAGDGSAFIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC----------RNKNPAPPLDAVEQILPTLVRLLHHN----DPEVLADSCWAISYLTDGP-------NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCG------------IIEPLMNLLSAK-------DTKIIQVILDAISNIFQAAEKLGET

Predicted Tertiary Structure


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TM-score=0.619 to 1ialA SCOP code=a.118.1.1	TM-score=0.854 to 1b3uA SCOP code=a.118.1.2	TM-score=0.611 to 1m8xA SCOP code=a.118.1.8	TM-score=0.688 to 1b3uA SCOP code=a.118.1.2	TM-score=0.774 to 1b3uA SCOP code=a.118.1.2