Template-based Modeling Results for YFBS_ECOLI

Submitted Primary Sequence

>Length 610
MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLTVPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTVAGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLVVNSELLREGYHGFSFFSVTPIGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFRDLIREYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVNGVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPESELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGMLAKQGRDFVALNLPEEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLMGKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMMLGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPVSSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLTVPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTVAGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLVVNSELLREGYHGFSFFSVTPIGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFRDLIREYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVNGVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPESELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGMLAKQGRDFVALNLPEEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLMGKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMMLGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPVSSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCCCEEECCCCCCEEECCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCEEEEEECHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLTVPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTVAGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLVVNSELLREGYHGFSFFSVTPIGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFRDLIREYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVNGVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPESELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGMLAKQGRDFVALNLPEEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLMGKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMMLGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPVSSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF
4303100000000000000001202110000000000000000203200210112000000000000100230100100011003112322110000000000000000110000000000001002313221130000000000000000001001100001003321232010110000000000000000000001122323233432223321320032132211012000232021112203103223321000010111442321012122212012300000101121011121012211332224232223322310001000123031113103201122211000000112222132202211012000000001131001003113312112113311321123210000000000000000022021000000000000203013031004202010000000000001003301000000200020022110100000000000000100100000000000001003202110100000000000000001110000000001010201100100000000000000000111023
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLTVPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTVAGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLVVNSELLREGYHGFSFFSVTPIGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFRDLIREYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVNGVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPESELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGMLAKQGRDFVALNLPEEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLMGKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMMLGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPVSSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF
1	MUSTER	1b3uA	0.114	0.903	1.005	threading_1	S-------LYPIAVLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELYDEDEVLLALAEQLGTFTTLVGGVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW-----FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEA---LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV-------IMGLSPILGKDNTIEHL----------------LPLFLAQLKDECPEVRLNIISNLDCEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCAWVYAIREAATSNLKKLVEKFGAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV-CGQDITTKHMLPTVLRMAG----DPVANVRFNVAKSLQKIGPILD--------------NSTLQSEVKPILEKLTVDVKYFAQEALTV
2	SPARKS	1vcta	0.155	0.307	1.823	threading_2	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YEPKSVKEIFIEMKLMVDLAYASLLFGDKEIAEEVLELEER------IDLLNYQLMMHSVLAARNVKEAEQVITILIANAIEDISNAAGDLAKMVLEGVELHPVIKETLEGEEIIGKIQVYPESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFGPNENFKIRAGDVLIGRGTRTSIDHLKEIARGAIRVIG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1qgra	0.075	0.982	2.393	threading_3	MELITILLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPNYVLHTLGTESASQCVAGIACAEIPVNQELIPQLVANV--TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLLFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL----TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYLEGPEPSQLKPLVAAINDVYLAPLLQCLIEGLSAEPRVAAAYEAADVADDQEEPATYCLSSSF-----ELIVQKLLETTDRPDGHQNNLRSSNSAKDCYPAVQKTTLVIMERLQQVLQMESNDLQSLLCATLQNVLRKVQHQDALRMFSGGVQEDALMAVSTLVEVLGGEFLKYMEAFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCVMQLLLENLGNENVHRSVKPQILSVFGDIAYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGD
4	PPA-I	1b3uA	0.089	0.848	0.921	threading_4	LGVERTRSELLPFLTDTI----YDEDEVLLALAEQLGTFTTLVGLPPLESLATVERDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELRQYFRNLCSDDT-----PMVRRAAASKLGEFAKVLELDVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTEL-------------------QKAVGPEITKTDLVPAFQNLMKDC----------------------EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV-----------------------IMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCDHVYAIREAATSNLKKLVEKFGAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-GQDITTKHMLPTVLRMAG----DPVANVRFNVAKSLQKIGPILD--------------NSTLQSEVKPILEKLTVDVKYFAQEALTV
5	HHPRED-l	1vct_A	0.144	0.307	3.224	threading_5	-------------------------------------------------------------------------------------YEPKSVKEIFIEMKMVDLAYASLLFGDKEIAEVLELEERID-LLN---YQL-----MMHSV----LAARNVKEA-------------------------EQVITILQIANA-----------------------I---EDI--------------------S---------------------------------------------NAAGDLAKMVL-EGVE--LHPVIKETILEGEEIIGKIQVYPESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFGPNENFKIRAGDVLIGRGTRTSIDHLKEIARGAI----------RVIG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	1vct_A	0.126	0.285	2.966	threading_6	-------------------------------------------------------------------------------------YEPKSVKEIFIEMKDVDLAYASLLFGDKEIAEEVELLMMHSVLAARNVKEQVITI------------------LQIANAIEDIS-----------------NAAGDLAKMVLEGVEL-------------HPVIKETILEGEEIIGKIQVYPESVIVGKTLGELDLATNTGVWIIAVRRGKR---WIFGPNENFKIRAGDVLIGRGTRTSIDHLKEIARGAIRVI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	2xwub	0.097	0.993	0.692	threading_7	IPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPVADMVRLFQAPQGRCLALLELLTVLPEEFQVRTSLAVECGAVFPLLEQLLSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAIS--QPDAQRYVNTLLKLIPLVLGLQEQ-LRQAVQMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNKLGRLLTSYSWQHTEALLYGFTIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIWLADHPVMINSVLPLVLHALGNPELSVSSVSTCKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTPQASALDLTRQLVHIFA-HEPAHFPPIEALFLLVTSVTLTLFQQGP
8	SAM-T99	2aemA	0.187	0.220	1.612	threading_8	-------------------------------------------------------------------------------SVRIIAEAERYENIEQLRMAGADQVISPF---------------------------------------------------VISGRL-------------------------------MSRSIDDG--------------------------------------------------------------------------------------------------------YEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISAL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3dh4A	0.123	0.761	0.868	threading_9	LP-----WWAVGASLIAANIS-----AEQFIGMSGSGYSIGLAIASYEWMS----AITLIIVGKYFLPIFIEKGIY--IPEFVEKRFN----KKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--GIP---LMYSILGLALFALVYSIVV--------------------WTDVIQV-FFLVLGGFMTTYMAVSFI-------GGTDGWFAGVSKMVDAA-----------------------------------------PGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWG-------------------FNQYIIQRT------LAAKSVSEAQ-KGIVFAAFLKL----------VPFLVVLPG--IAAYVITSDPQLMASLGD------IAATNLPSAANADKAYPWLTQFLGVKGVVFAALAAAIVSSLASMLNSTAT--IFTMDIYKEYISPTAAVVALIIACLIALGGIGQ---AFQYIQEYTGL--VSPGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMQMLYTLLFTMVVIAFTSLSTSNDDDPKGISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWVLYK-
10	SPARKS	1lnqa	0.151	0.456	1.551	threading_10	-------------------------------------------------------------------------------------------------------------PATRILLLVLAVIIYFHFIEGESWTVLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLCGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSTRVSDLEKANVRG-ARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVI----------SPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.911 to 1b3uA SCOP code=a.118.1.2	TM-score=0.774 to 3ea5B SCOP code=a.118.1.1	TM-score=0.562 to 2bkpA SCOP code=a.7.12.1	TM-score=0.692 to 1qgkA SCOP code=a.118.1.1	TM-score=0.838 to 1b3uA SCOP code=a.118.1.2