Template-based Modeling Results for YFBK_ECOLI

Submitted Primary Sequence

>Length 575
MRNKNIIMLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAAQQAAIKEAEQSAAAAKALAQQEVQQYSDKQALQGRLQEAPTFARAAKAKATHIANPGTARYQQFDDNPVKQVAQNPLATFSLDVDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYFPSDWDIKDKQSIPASKPIPFAMRYELAPAPWNEQRTLLKVDILAKDRKSEELPASNLVFLIDTSGSMISDERLPLIQSSLKLLVKELREQDNIAIVTYAGDSRIALPSISGSHKAEINAAIDSLDAEGSTNGGAGLELAYQQATKGFIKGGINRILLATDGDFNVGIDDPKSIESMVKKQRESGVTLSTFGVGNSNYNEAMMVRIADVGNGNYSYIDTLSEAQKVLNSEMRQMLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRVEHFNNDNVDAGDIGAGKHITLLFELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIRWKYPQGKESQLVEFPLGPTINAPSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQAKGEDPQGYRAEFIRLIELADGVTDISQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRNKNIIMLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAAQQAAIKEAEQSAAAAKALAQQEVQQYSDKQALQGRLQEAPTFARAAKAKATHIANPGTARYQQFDDNPVKQVAQNPLATFSLDVDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYFPSDWDIKDKQSIPASKPIPFAMRYELAPAPWNEQRTLLKVDILAKDRKSEELPASNLVFLIDTSGSMISDERLPLIQSSLKLLVKELREQDNIAIVTYAGDSRIALPSISGSHKAEINAAIDSLDAEGSTNGGAGLELAYQQATKGFIKGGINRILLATDGDFNVGIDDPKSIESMVKKQRESGVTLSTFGVGNSNYNEAMMVRIADVGNGNYSYIDTLSEAQKVLNSEMRQMLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRVEHFNNDNVDAGDIGAGKHITLLFELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIRWKYPQGKESQLVEFPLGPTINAPSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQAKGEDPQGYRAEFIRLIELADGVTDISQ
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRNKNIIMLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAAQQAAIKEAEQSAAAAKALAQQEVQQYSDKQALQGRLQEAPTFARAAKAKATHIANPGTARYQQFDDNPVKQVAQNPLATFSLDVDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYFPSDWDIKDKQSIPASKPIPFAMRYELAPAPWNEQRTLLKVDILAKDRKSEELPASNLVFLIDTSGSMISDERLPLIQSSLKLLVKELREQDNIAIVTYAGDSRIALPSISGSHKAEINAAIDSLDAEGSTNGGAGLELAYQQATKGFIKGGINRILLATDGDFNVGIDDPKSIESMVKKQRESGVTLSTFGVGNSNYNEAMMVRIADVGNGNYSYIDTLSEAQKVLNSEMRQMLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRVEHFNNDNVDAGDIGAGKHITLLFELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIRWKYPQGKESQLVEFPLGPTINAPSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQAKGEDPQGYRAEFIRLIELADGVTDISQ
54333111000000001100233333333333332223332222332223323322222322021202211222122232331222131131422222322222133133121201132210000010220012101200332211232111011012111231323233212223312000101012122343110010102143342331210000000001102213210200120022004202331000000011202000221222112102200320213200200100110022024222422110000001122222222131022003323422010000000123122200110032130100102112101300210033111222320202020132211202111233232323322201020120123220100010102344322220200132422333322310102021223434211102121222232223101010000000220321312230203100200240333223111010020021023124334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRNKNIIMLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAAQQAAIKEAEQSAAAAKALAQQEVQQYSDKQALQGRLQEAPTFARAAKAKATHIANPGTARYQQFDDNPVKQVAQNPLATFSLDVDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYFPSDWDIKDKQSIPASKPIPFAMRYELAPAPWNEQRTLLKVDILAKDRKSEELPASNLVFLIDTSGSMISDERLPLIQSSLKLLVKELREQDNIAIVTYAGDSRIALPSISGSHKAEINAAIDSLDAEGSTNGGAGLELAYQQATKGFIKGGINRILLATDGDFNVGIDDPKSIESMVKKQRESGVTLSTFGVGNSNYNEAMMVRIADVGNGNYSYIDTLSEAQKVLNSEMRQMLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRVEHFNNDNVDAGDIGAGKHITLLFELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIRWKYPQGKESQLVEFPLGPTINAPSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQAKGEDPQGYRAEFIRLIELADGVTDISQ
1	MUSTER	1pcxA	0.132	0.842	0.901	threading_1	PMN------QLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDRSTLNAVPKNSSLLKKSK---VIRPYQHLYDDIDPPPLNEDGLIVRCRRCR-----------SYMNPFVTFI----------------QGRR----RCNFCRLANDVPMQMDQPKSRYDRN----------EIKCA--------VMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIDERTRISILCVDNAIHYFKIPLDKACRQNIETLLTKINLITNFALGPALKSAYHLIGGVG-----GKIIVVSGTLPNLGIGKDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGPNDIVKFSTEFAKHISMDFCMETVMRARGSTG-LRMSRFYGHFFNR------SSDLCAFSTMPRDQSYLFEVNVD-------------------ESIMADYCYVQVAVLLSLNNSQRIITLAMPTTESLAEVYASADQLAIASFYNSKA--VEKALNSSLDDARVLINKSVGGAPLRLCANLRMFPLLMHSLTKHMA
2	SPARKS	1shtx	0.216	0.306	2.426	threading_2	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAFDLYFVLDKSGSV-ANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLV--PSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	3efoB	0.121	0.908	1.473	threading_3	AMGS--PIQVIENDRASRGGQVYATNTRGQIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGFCNCVNDVP--------PFYFQHLDHIGRRLDHYEKPEL---------------------------------SLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEERVGFITYNKVLHFFNVKSNLAQQSVIHNLLDQISNENETVFAPVIQAGMEALKAA---DCPGKLFIFHSSLPTAEQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNQMHLDRQQFLNDLRNDIKKIGFDAIMRVRTSTGFRATDFFGGILM-------NNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDFKAVLHQPLKVIQTAHMLACYRKNCASPSAASQLILPDSMELIQGIFNVPSFPYSQQLRMIMGIIKEICQLLN
4	PPA-I	1shuX	0.218	0.311	1.126	threading_4	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SCRRAFDLYFVLDKSGSVAN--NWIEIYNFVQQLAERFSPEMRLSFIVFSSQATIILPLGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLV--PSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	3hrz_D	0.146	0.859	2.933	threading_5	------RLFYPYPVQTRTCRSTG----SWSTLKQDQK--TVRKAECRAIRPDFENGEYWSDEDGYTL-RGSANRTCQGRWSGQTAICDNGYCSNP--GIPIGTKVGQYRLDSVTYHCSR---GLTLRGSQ-----RRTCQEGGSWSGTSCQDPQEVAEAFLSSLTET------------------------------------KRKIVLDPSGSMNIYLVLDGSGSIGAS-DFTGAKKCLVNLIEKVGVKPRYGLVTYATYPKIWVKVSEASNADWVTKQLNEINLKSGTNTKKALQAVYSMMSWP--NRTRHVIILMTDGLHNMGG-DPITVIDEIRDLREDYLDVYVFGVGPL-VNQVNINALASKKEQHVFKVKDMENLEDVFYQMIDESQSLLCGQAKISVIRPS---CMGAVVSEYFVLTAAHCFTSIKVSVGGEK---RDLEIEVVLFHPNYNINGK-----KEAGIPEFYDYDVALIKL--KNKLKYGQTIRPICLPCTALRLPPTT--TCQQQKEELLPAQDIKLTRKNKGSCERDAQYAPGYDKVDIS-EVVTFLNTCRGDSGGP-
6	HHPRED-g	1q0p_A	0.206	0.287	2.539	threading_6	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SMNIYLVLDGSDSI-GASNFTGAKKSLVNLIEKVAVKPRYGLVTYATYPKIWVKVSESSNADWVTKQLNEINLKSGTNTKKALQAVYSMMSWPDDVETRHVIILMTDGLHNMGGDPITVIDEIRDLPREDYLDVYVFGVGP-LVNQVNINALASKKDNEVFKVKD------------------LS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	1shtx	0.216	0.306	2.561	threading_7	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAFDLYFVLDKSGSVA-NNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLV--PSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	SAM-T99	3ibsA	0.306	0.296	3.071	threading_8	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KGVEVIIALDISNSLAQDVRLEKAKRLISRLVDELD-NDKVGI-VFAGDAFTQLPIT--SISAKFLESISSLISKQGTAIGEAINLATRSFTPQ--EGVGRAIIVITDGENHEG-----GAVEAAKAAAEKGIQVSVLGVGP-ELNEG-CQEIAKDGKGIYVRVDNSNSAQKAISQEISKAKS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3efoB	0.125	0.875	0.853	threading_9	MGS---PIQVIENDRASR-GGQVYATNTRGQIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQ-----------IPLAAVIKPFATIPSNESPLYLVNHGESGPVRKAYMCPFMQFI----------------GGRR----QCGFCNCVNDVPPFYFQHLDHIGRRL---------DHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKITSAIRVGFITYNKVLEVFVPLLDQESQSVIHNLLDQISNENETVFAPVIQAGMEALKAA---DCPGKLFIFHSSLPTAEQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNQMHLDRQQFLNDLRNDIEKIGFDAIMRVRTSTG-FRATDFFGGILMN------NTTDVEMAAIDCDKAVTVEFKHD------------------DKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAKAVLHQPLKVIREILVNQTPSAAMKVLPVYMNCLLKNCVLLSRPE
10	SPARKS	2x31a	0.194	0.313	1.980	threading_10	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KEMSDRVLIFAVDASGSAAV---LSEAKGAVELLLGRAAARDHVSLITFRGTAQVLLQPSR--SLTQTKRQLQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAAMRPNPALVDLARTMDAHYIALP--RATAHKMADVLGAALEA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.735 to 1pcxA SCOP code=a.71.2.1	TM-score=0.686 to 1pcxA SCOP code=a.71.2.1	TM-score=0.619 to 1shuX SCOP code=c.62.1.1	TM-score=0.683 to 1pcxA SCOP code=a.71.2.1	TM-score=0.644 to 1shuX SCOP code=c.62.1.1