Template-based Modeling Results for YFAP_ECOLI

Submitted Primary Sequence

>Length 258
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
CHHHHHHHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCEEEECCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEECCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
432101000000010003122233020201121022130231222222211112131233222100021314322222322301000101212120243010012011241220010013323121100001222322241200000002224210000001141210001121143200000112212001000022124020000001011323231110101001232223222110002044332212011033
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
1	PROSPECT2	1maeH	0.075	0.981	1.257	threading_1	SSASAAAAAAAAALAAGAADGPTNDEAPGADGRRFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL-----KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLISVAQDGGPDLYALSAG
2	HHPRED-l	3afg_A	0.166	0.795	1.583	threading_2	LSQAVNNAWDAGLVVVVAAAASKVITVGAVDKYDVITDFSSRGPTAD-NRLKPEVVAP-GNWIIAAR---ASGTSMGQPINDYYTAAPGTAMATPAYGAGRVNAYKAAYYDNYKLTFVSNKGSQSHQFTI--S-----GAGFVTATLYWDNSGSDLDLYLYDPNGNQVDYSYTA-------------YYGFEKVGYYNPTAGTWTIKVVSYSGS-----ANYQVDVVSD-GSLGQP----------------------
3	HHPRED-g	3afg_A	0.155	0.798	1.594	threading_3	LSQAVNNAWDAGLVVVVAAGNSGPYTVGSPAAASVITYDVITDFKPEVVAPGNWIIAAPGTAMATHVAGIAA----LLLQAHPSWTPTADIIADIAYGAGRVNAYKAAYYDNYALTFVSNKGSQSHQFTIS-------GAGFVTATLYWDNSGSDLDLYLYDPNGNQVDYSYT-------------AYYGFEKVGYYNPTAGTWTIKVVSYSGS-----ANYQVDVVSD-GSLGQP----------------------
4	SAM-T99	3afgA2	0.278	0.279	1.809	threading_4	-------------------------------------------------------------------------------------------------------------------------------------------AGFVTATLYWDNSGSDLDLYLYDPNG-------------NQVDYSYTAYYGFEKVGYYNPTAGTWTIKVVSYSG-----SANYQVDVVSD-----------------------------
5	PROSPECT2	1n26a	0.082	0.895	1.176	threading_5	L-----------APRRCPAQEVARGVLTSLPGDCPGVEPE----------DNATVPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAG-----RPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEW-GPRSTPSLTTKAVLLVRKFQNSPAEDFQYSQESQKFSCQLAVPEGDSSFQTFQGCGILQPITVTAVARNPRWLSVTWQDPHSWNSSFYLRFELRYRAERSKTFTTWMHCVIHDAWSGLVVQLRAQEE
6	HHPRED-l	1wmd_A	0.163	0.833	1.347	threading_6	SRNVDDYVRKNDMTILFAATAKNAITVGATENLRPSFGSADNINHVASRGPTPDVMAP-GTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAIGLGYPNGNQGWGRNVAYVNESSTSQKATYSF--TAT---AGKPLKISLVWSDAPNDLDLVITAPNGTQYVGNDFTSPYNDNWD-----GRNVENVFINAPQSGTYTIEVQAYNVPVGPQ-TFS-LAIV-N-----------------------------
7	HHPRED-g	2qng_A	0.165	0.422	1.118	threading_7	-------------------------------------------------------------------------------------------------------------------------------------------KRKVELAVKWDPSATDLDIVAALAGAYVVHFDS-RSPDGTYLNRDSKDGKGFEV-TLERLDSRRVVVGVVIQQRDHRVGVLNPGLR-RE-GY-----TVLAEDDFGGLGTAATVGEF-V
8	SAM-T99	3afgA	0.235	0.446	1.719	threading_8	-------------------------------------------------------DIAYGAGRVNAYKAAYYDNYAKLTFT-----------------------GYVSNKGSQSHQFTISG------------------AGFVTATLYWDNSGSDLDLYLYDPNG-------------NQVDYSYTAYYGFEKVGYYNPTAGTWTIKVVSYSG-----SANYQVDVVSD-----------------------------
9	PROSPECT2	2bbkh	0.063	0.984	1.163	threading_9	ARRVYVNDPAHFLPNPVVADDGSFIAHASTVFSRIARDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVEGKAFKRMLDVPDCYHIFPTAPRDGSLAKVAFGTEGTPEITH--TEVFHPEDEFLINHPAYSQKAGYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY--HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGINVSQDEKPLLYALSTG
10	HHPRED-l	3pdd_A	0.119	0.682	1.345	threading_10	-----------------------MVTIDSPVAGE-------------------RFEAG--KDI--NISATVKSK---TPVSKVEFYNGDTLI--SSDTTAPYTAKITGAVGAYNLKAVAVLSDGRRITPVLVKV---IVKPTVKLTAPKSNVNEFLKITASDSDGKVDFLV-----DGEVIGS-DR--EAPYEYEWKAVE-GNHEISVIAYDDDDAAS-TPDSVKIFVKQARLEHHHHHH------------------

Predicted Tertiary Structure


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TM-score=0.465 to 1olmE SCOP code=a.5.3.1	TM-score=0.495 to 1wmfA SCOP code=b.18.1.20	TM-score=0.398 to 1olmE SCOP code=a.5.3.1	TM-score=0.537 to 1n26A SCOP code=b.1.1.4	TM-score=0.637 to 1wmfA SCOP code=b.18.1.20