Template-based Modeling Results for YEIR_ECOLI

Submitted Primary Sequence

>Length 328
MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQILDLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRTTPESEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLAALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPEGLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQILDLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRTTPESEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLAALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPEGLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA
CCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCHHHCCCEEECCEEEEEEHHHHHHHHCCCHHHHHHHHHHCCEEEEECHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEECCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQILDLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRTTPESEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLAALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPEGLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA
5020000000011000000110022333212000000100210010200241222011012000000012201200220043231110001011102022002101122122201020000000032012231323310210011000000010120233002101300242123120020220302030011222212212222222232113311121212333322322221211100000022322111200020033130010100010241101001102101023332233300000001230213001200231222334
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQILDLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRTTPESEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLAALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPEGLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA
1	MUSTER	1nijA	0.255	0.909	2.920	threading_1	PIAVTLLTGFLGAGKTTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNIQFDRLVIECTGMADPGPIIQTFFSEVLCQRYLLDGVIALVDAVHA-DEQMNQFTIAQSQVGYADRILLTKTDVAGE--AEKLHERLARINARAPVYTVTHGDIDLGLFNTNGFMLEENVVSTKPRF---------------------HFIADKQNDISSIVVELDYPVDISEVSRVMENDKLLRYKGMLWIDGEPNRLLFQGVQRLYSADGDEKPHSTMVFIGI-QLPEEEIRAAFAGLRK----
2	SPARKS	1nija	0.252	0.909	5.343	threading_2	PIAVTLLTGFLGAGKTTLLRHILNEQ-HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLQFDRLVIECTGMADPGPIIQTFFHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYADRILLTKTDVAG--EAEKLHERLARINARAPVYTVTHGDIDLGLLNTNGFMLEENVVSTKPRF---------------------HFIADKQNDISSIVVELDYPVDISEVSRVMEADKLLRYKGMLWIDGEPNRLLFQGVQRLYSAWGDEKPHSTMVFIGI-QLPEEEIRAAFAGLRK----
3	PROSPECT2	1nijA	0.247	0.912	3.545	threading_3	PIAVTLLTGFLGAGKTTLLRHILNEQ-HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNIQFDRLVIECTGMADPGPIIQTFFHEVLCQRYLLDGVIALVDAVHADEQM-NQFTIAQSQVGYADRILLTKTDVAGEAE--KLHERLARINARAPVYTVTHGDIDLGLLFNTNGF------------------MLEENVVSTKPRFHFIADKQNDISSIVVEL--DYPVDISEVSRVMEADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADGDEKPHSTMVFIGI-QLPEEEIRAAFAGLR----K
4	PPA-I	1nijA	0.248	0.909	6.864	threading_4	PIAVTLLTGFLGAGKTTLLRHILNEQ-HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLQFDRLVIECTGMADPGPIIQTFFSEVLCQRYLLDGVIALVDAVHADEQM-NQFTIAQSQVGYADRILLTKTDVAG--EAEKLHERLARINARAPVYTVTHGDIDLGLFNTNGFMLEENVVSTKPRF---------------------HFIADKQNDISSIVVELDYPVDISEVSRVMEADKLLRYKGMLWIDGEPNRLLFQGVQRLYSPWGDEKPHSTMVFIGI-QLPEEEIRAAFAGLRK----
5	HHPRED-l	1nij_A	0.245	0.909	6.647	threading_5	PIAVTLLTGFLGAGKTTLLRHILNEQ-HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNIQFDRLVIECTGMADPGPIIQTFFHEVLCQRYLLDGVIALVDAVHADEQMNQ-FTIAQSQVGYADRILLTKTDVAGEAE--KLHERLARINARAPVYTVTHGDIDLGLLFTNGFMLEENVVS-------------------TKPRFHFIADKQN--DISSIVVELDYPVDISEVSRVMENDKLLRYKGMLWIDGERLLFQGVQRLYSADWWGDEKPHSTMVFIGIQ-LPEEEIRAAFAGLRK----
6	HHPRED-g	1nij_A	0.252	0.909	7.320	threading_6	PIAVTLLTGFLGAGKTTLLRHILNEQ-HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLGNIQFDRLVIECTGMADPGPIIQTFSHEVLCQRYLLDGVIALVDAVHADEQMNQ-FTIAQSQVGYADRILLTKTDVAGEA--EKLHERLARINARAPVYTVTHGDIDLGLFNTNGFMLEENVVSTK---------------------PRFHFIADKQNDISSIVVELDYPVDISEVSRVMEADKLLRYKGMLWIDGEPNRLLFQGVQRLYSWRGDEKPHSTMVFIGI-QLPEEEIRAAFAGLRK----
7	SP3	1nija	0.248	0.909	5.274	threading_7	PIAVTLLTGFLGAGKTTLLRHILNEQ-HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLQFDRLVIECTGMADPGPIIQTFFSEVLCQRYLLDGVIALVDAVHADEQM-NQFTIAQSQVGYADRILLTKTDVAGEA--EKLHERLARINARAPVYTVTHGDIDLGLFNTNGFMLEENVVSTKPRF---------------------HFIADKQNDISSIVVELDYPVDISEVSRVMEADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADGDEKPHSTMVFIGI-QLPEEEIRAAFAGLRK----
8	SAM-T99	1nijA	0.243	0.915	6.956	threading_8	-IAVTLLTGFLGAGKTTLLRHILNEQ-HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNIQFDRLVIECTGMADPGPIIQTFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIA-QSQVGYADRILLTKTDVAGEAE--KLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQND------------------ISSIVVELDYPVDISEVSRVMLESADKLLRYKGMLWIDGEPNRLLFQGVQRLDRPWGDEKPHSTMVFIG-IQLPEEEIRAAFAGLRK----
9	MUSTER	1nijA2	0.171	0.552	1.357	threading_9	----------------------------------------------------------------------------------------------------------------------VIALVDAVHADEQM-NQFTIAQSQVGYADRILLTKTDVAGE--AEKLHERLARINARAPVYTVTHGDIDLGLFNTNGFMLEENVVSTKPRF---------------------HFIADKQNDISSIVVELDYPVDISEVSRVMEADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADGDEKPHSTMVFIGI-QLPEEEIRAAFAGLRK----
10	SPARKS	2hf8a	0.168	0.561	1.239	threading_10	KHGVVAFDGAIGSGKTLLIEKLIDNLKDKYKIACIAGDV-IAKFDAER-EKHGAKVVPLNTGK-ECHLDAHLVGHALEDLNLDEIDLLFIENVG----NLICPADFDLGT------HKRIVVISTTEGDDTIEKH-----PGIKTADLIVINKIDLADAVGADKKENDAKRINPDAEVVLLSLKTEGFDKV----LEIEKSVKEVK--------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.913 to 1nijA SCOP code=c.37.1.10	TM-score=0.911 to 1nijA SCOP code=c.37.1.10	TM-score=0.904 to 1nijA SCOP code=c.37.1.10	TM-score=0.913 to 1nijA SCOP code=c.37.1.10	TM-score=0.905 to 1nijA SCOP code=c.37.1.10