Template-based Modeling Results for YEHD_ECOLI

Submitted Primary Sequence

>Length 180
MKRSIIAAAVFSSFFMSAGVFAADVDTGTLTIKGNIAESPCKFEAGGDSVSINMPTVPTSVFEGKAKYSTYDDAVGVTSSMLKISCPKEVAGVKLSLITNDKITGNDKAIASSNDTVGYYLYLGDNSDVLDVSAPFNIESYKTAEGQYAIPFKAKYLKLTDNSVQSGDVLSSLVMRVAQD
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKRSIIAAAVFSSFFMSAGVFAADVDTGTLTIKGNIAESPCKFEAGGDSVSINMPTVPTSVFEGKAKYSTYDDAVGVTSSMLKISCPKEVAGVKLSLITNDKITGNDKAIASSNDTVGYYLYLGDNSDVLDVSAPFNIESYKTAEGQYAIPFKAKYLKLTDNSVQSGDVLSSLVMRVAQD
CHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEEEECEEEEEECCCCEEEEECCCEEHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCHHCCCCCCEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCEEEEEEEHHHHHCCCCCCCEEEEEEEEEEEECC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKRSIIAAAVFSSFFMSAGVFAADVDTGTLTIKGNIAESPCKFEAGGDSVSINMPTVPTSVFEGKAKYSTYDDAVGVTSSMLKISCPKEVAGVKLSLITNDKITGNDKAIASSNDTVGYYLYLGDNSDVLDVSAPFNIESYKTAEGQYAIPFKAKYLKLTDNSVQSGDVLSSLVMRVAQD
423111000000000000000012232010102010020102022222211020120012102231332223322211101020202442210200011234112213211222200000001223111122212131322422422110101000031122313202020101020146
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKRSIIAAAVFSSFFMSAGVFAADVDTGTLTIKGNIAESPCKFEAGGDSVSINMPTVPTSVFEGKAKYSTYDDAVGVTSSMLKISCPKEVAGVKLSLITNDKITGNDKAIASSNDTVGYYLYLGDNSDVLDVSAPFNIESYKTAEGQYAIPFKAKYLKLTDNSVQSGDVLSSLVMRVAQD
1	MUSTER	2jmrA	0.128	0.828	1.790	threading_1	------------------------MADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFNNIGATTPVPFRILL------SPCGNAVSAVKVGFTGVADSHNANLLTVSAASGLGIQLLNEQQNQIPLNAPSSALSWTTTPGKPNTLNFYARLMATQ-VPVTAGHINATATFTLEYQ
2	SPARKS	3jwne	0.141	0.828	3.988	threading_2	-------------------------ADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFNNIGATTPVVP----FRILLS-PCGNAVSAVKVGFTGVADSHNANLLTVSAAAGLGIQLLNEQQNQIPLNAPSSALSWTTLTPGPNTLNFYARLMA-TQVPVTAGHINATATFTLEYQ
3	PROSPECT2	2j2zB	0.092	0.783	1.803	threading_3	----------------------------RAAFHGEVVRPACTLAMEDAWQIIDMGETPVRDLQNGFSGPE-------RKFSLRLRNCESDSRIRVTFDGVRGETPDKFNLSGQAKGINLQIADVRGNI---ARAGKVMPAIPLTGNEEALDYTLRIVR-NGKKLEAGNYFAVLGFRVDYE
4	PPA-I	2j2zB	0.074	0.822	3.274	threading_4	----------------------------RAAFHGEVVRPACTLAMEDAWQIIDMGETPVRDLQNGFSGPERKFSLRLRNCEFNSQGLFSDSRIRVTFDGVRGETPDKFNLSGQAKGINLQIADVRGNIARA---GKVMPAIPLTGNEEALDYTLRIVR-NGKKLEAGNYFAVLGFRVDYE
5	HHPRED-l	2uy6_B	0.125	0.800	4.087	threading_5	----------------------------KVTFNNTVVDAPCSISQKSADQSIDFGQLSKSFLEAGGV-SKPMDLDIELVNCDITAFK--KGTVKLAFTGPIVNGHDELDTNGGTGL-AIVV-QGAGK-NVVFDG-SEGDANTLKDGENVLHYTAVVKKSVGAAVTEGAFSAVANFNLTY-
6	HHPRED-g	2uy6_B	0.139	0.800	4.091	threading_6	----------------------------KVTFNNTVVDAPCSISQKSADQSIDFGQLSKSFLEAGGV-SKPMDLDIELNCDITAFK---KGTVKLAFTGPIVNGHSDELDNGGTGL-AIVV-QGAGKNVVFDG--SEGDANTLKDGENVLHYTAVVKKSVGAAVTEGAFSAVANFNLTYQ
7	SP3	3jwne	0.134	0.828	3.716	threading_7	-------------------------ADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFNNIGATTPVVP----FRILLS-PCGNAVSAVKVGFTGVADSHNANLLAVSAAAGLGIQLLNEQQNQIPLNAPSSALSWTLTPGKPNTLNFYARLMATQV-PVTAGHINATATFTLEYQ
8	SAM-T99	2jtyA	0.201	0.828	4.030	threading_8	--------------------AATTVNGGTVHFKGEVVNAACAVDAGSVDQTVQLGQVRTASLAQEGA------TSSAVGFNIQLDCDTNVASKAAVAFLGTAIHTNVLALQGSATNVGVQILDRTGALTLDGATFSSETT--LNNGTNTIPFQARYFATGA--ATPGAANADATFKVQY-
9	MUSTER	2j2zB	0.074	0.822	1.739	threading_9	----------------------------RAAFHGEVVRPACTLAMEDAWQIIDMGETPVRDLQNGFSGPERKFSLRLRNCEFNSGNLFSDSRIRVTFDGVRGETPDKFNLSGQAKGINLQIADVRGNIARA---GKVMPAIPLTGNEEALDYTLRIVRN-GKKLEAGNYFAVLGFRVDYE
10	SPARKS	2jtya	0.176	0.850	3.648	threading_10	--------------------AATTVNGGTVHFKGEVVNAACAVDAGSVDQTVQLGQVRTASLAQEGATSSAVG----FNIQLNDCDTNVASKAAVAFLGTAIDAGHTNVAAGSATNVGVQILDRTGA-ALTLDGATFSSETTLNNGTNTIPFQARYFATG--AATPGAANADATFKVQYQ

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.668 to 1pdkB SCOP code=b.2.3.2	TM-score=0.832 to 2j2zB SCOP code=b.2.3.2	TM-score=0.667 to 1klfP SCOP code=b.2.3.2	TM-score=0.779 to 2j2zB SCOP code=b.2.3.2	TM-score=0.837 to 2j2zB SCOP code=b.2.3.2