Template-based Modeling Results for YEDV_ECOLI

Submitted Primary Sequence

>Length 452
MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDSINKIVNRTNVSDGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKINSIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRITLPQRN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDSINKIVNRTNVSDGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKINSIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRITLPQRN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDSINKIVNRTNVSDGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKINSIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRITLPQRN
55420121110000000000000000000010002202220122022102102210231222310210023113223100001122211000223122121331222322222211101123220000101124232200000021022112002201310111000000000010010021012102300100230243303320322212410230020014002102411211120021002202000100100010012323222302300210131021003002200100302333122322201022002200210221034230202021312010022000100000010004102440201010123330001000122202231032002201202312222021000000100031130202021234101020201347
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDSINKIVNRTNVSDGMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKINSIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRITLPQRN
1	MUSTER	3dgeA	0.197	0.493	1.552	threading_1	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLLDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFECPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAYVKVILDEKDGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSTYEVPGTGLGLAITKEIVELHGGRIWVESEGKGSRFFVWIPKDR
2	SAM-T99	3a0rA	0.192	0.692	4.054	threading_2	--------------------------------------------------------------------------------IITLSKDGRITEWN--------------KKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVFLNFYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRR----RLSILG---------------------------EMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSK----ERVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDYTKVRVSVWNSGPPIPEELKEKIFSPFFTT----------LGLSICRKIIEEHGGKIWTENRENGVVFIFEIPKTP
3	SPARKS	3d36a	0.206	0.473	4.174	threading_3	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPHMVIRLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPA----PETPEKLNVKLEIERVIDILRPLANMSCVDIQATAPFSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGVLIRIADTGVGMTKEQLERLGEPYFT---TKGVKGTGLGMMVVYRIIESMNGTIRIESIHKGTTVSIYLPLAS
4	PROSPECT2	1y8nA	0.142	0.668	2.521	threading_4	P------------------------------------------------KQIERYSRFSPSPLSIKQFLDFGRDNAC-----------------------------------------------------------------------------EKTSYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGLVQS------------------WYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKHPTCNVADVVKDAYETAKMLCEQYELEVEEDKPIQVVYVPSHLFHMLFELFKNSMRAKEGYPAVKTLVTLGKEDSIKISDLGGGVPLRKIDRLFNYMYS-------PLFGYGLPISRLYARYFQGDLKLYSEGVGTDAVIYLKALK
5	PPA-I	3dgeA	0.202	0.493	3.025	threading_5	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRIDRMKTEFIANISHELRTPLTAIKAYAETIYNGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFECPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAYVKVILDEKDGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYPGTGLGLAITKEIVELHGGRIWVESEGKGSRFFVWIPKDR
6	HHPRED-l	2c2a_A	0.193	0.504	4.821	threading_6	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEN--VTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFEVPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAYVKVILDEKDGGLIIVEDNGIGIPDHAKDRIFEQFYRVD-------TGLGLAITKEIVELHGGRIWVESVGKGSRFFVWIPKD-
7	HHPRED-g	2c2a_A	0.192	0.507	3.982	threading_7	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MENVTES--KELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAYVKVILDEKGGVLIIVEDNGIGIPDHAKDRIFEQFYRVD-------TGLGLAITKEIVELHGGRIWVESVGKGSRFFVWIPKDR
8	SP3	2c2aa	0.197	0.507	4.250	threading_8	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEN--VTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVEAYIDPTRIRQVLLNLLNNGVKYSKKDAYVKVILDEKDGVLIIVEDNGIGIPDHAKDRIFEQFYRVD-------TGLGLAITKEIVELHGGRIWVESEGKGSRFFVWIPKDR
9	SAM-T99	3dgeA	0.205	0.487	5.947	threading_9	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLLDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESPVEAYIDPTRIRQVLLNLLNNGVKYSAPDKYVKVILDEDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYPGTGLGLAITKEIVELHGGRIWVESEGKGSRFFVWIP---
10	MUSTER	3a0rA	0.199	0.690	1.543	threading_10	-------------------------------------------------------------------FSESILESLETAIITLSKDGRITE-KENVLGRRLKDLPDFEEI-GSVAESVFENKEPVFLNFY--KFGERYFNIRFSPFRNAKTQLLEGV---------IITI------------------------------DVTELYKYEEE----------------KRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKERV----LEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTVRVSVWNSGPPIPEELKEKIFSPFF----------TTLGLSICRKIIEDEGGKIWTENRENGVVFIFEIPKTP

Predicted Tertiary Structure


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TM-score=0.558 to 1ys3B SCOP code=d.122.1.3	TM-score=0.554 to 1ys3B SCOP code=d.122.1.3	TM-score=0.548 to 1ys3B SCOP code=d.122.1.3	TM-score=0.540 to 1ys3B SCOP code=d.122.1.3	TM-score=0.713 to 1y8pA SCOP code=a.29.5.1