Template-based Modeling Results for YEDQ_ECOLI

Submitted Primary Sequence

>Length 564
MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRDAVTEFEQHRDEHAWKIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRDAVTEFEQHRDEHAWKIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA
CCCCEEECCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHEEEEECCCEEEEECCCCCCCCCCHHHHCCCCCHHHHHHCHHHCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCEECCCCEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRDAVTEFEQHRDEHAWKIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA
553122123311031002211212000000000000000000110010221112112210220021023112110210110120021003021312203300110222232310202032221121210021101303112231310121010011001013003322212300000011110000111112530222111112021011202331333101000022332242322000000012311010000000202101200220123323010000113121022111321212112222120012003232420021321100112012120000100102311302000000000000000000000001002210210221120011202112013010110012103200310234421000000002103001020002000200110010013102331000101111000001101221012002200210332312124222020000000000232232203200100040011023322210001344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRDAVTEFEQHRDEHAWKIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA
1	MUSTER	2v0nA	0.228	0.785	1.745	threading_1	----------------------------------------SAR-ILVVDD-----IEANVRLLEAKLTAEAMDGPTALAMAARDLPDIILLDVMMPGM-DGFTVCRKLKDDP-------TTRHIPVVLIT----------ALDG---RGDRIQGLESG-----AS---------DFLTK----------IDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAA--------------RLDGLGGRVLIVD-DNERQAQRVAAELGV-----------EHRPVIESDPEKAK--ISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQL-PVLAMVDPDDRGRMVKALEIDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGEMLNVTISIGVSATAGEGD-TPEALLKRADEGVYQAKASGRNAVVGKAAH
2	SPARKS	3i5aa	0.230	0.532	4.756	threading_2	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SAMVAMIGEAVRRGLAGHESIDFHFCADPHQQAVQIKPTVIQDLVMPGLDGLTLVREYRSNPL-----TRDIPIIVLSTKEDPLIKSAAYLVKLPDNIELVARIRYHSRSYMTLLQRDEAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGDEALRQVAKAIRNSCRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHAPVPGSSLTVSIGVATVTPQVGQHSRQLILDADKGLYLAKNNGRNQVAAG---
3	PROSPECT2	1w25A	0.217	0.761	3.281	threading_3	SARILVVDIEANVRLLEAKLEYYEVSTAM--------------------------------DGPTALAMAARDLMDGFTVCRKLKDDPTTRHIPALDGRGDRIQGLESGASDFLT---------------------KPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMG-----------VIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAGGPVDLVIVNAAAKN-----------FDGLRFTAALRSEERTRQLPVLAMVDPDDR--------------------GRMVKALEIGVNDILSRPID---------------------------------------PQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAGREMLNVTISIGVSATAGEGD-TPEALLKRADEGVYQAKASGRNAVVGKAAH
4	PPA-I	3breB	0.229	0.559	3.421	threading_4	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APLDGAVMVLLVD-DQAMIGEAVRRSL-ASEAGIDFHFCSDPQQAVAVANQIKPTLVMPGVDGLTLLAAYRGNPAT---RDIPIIVLSTKEEPTVKSAANDYLVKLPDAIELVARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPSHLTVSIGVSTLVPGGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQP
5	HHPRED-l	1w25_A	0.214	0.746	5.896	threading_5	---------------------SAR--------------------ILVVDD-----------------------IEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL---PDIILLDV--MMPMDGFTVCRKLDDPLIALDGR---GDRIQGLESG--------------ASDFLTK---------PIDDVMLFARVRSLTRFKLVIDELRQRESGRRMGVIAGAAARLDGLGGRV---------------LIVDDNERQAQRVAAE-LG--VEHRPV-IESDPEVIVNAAAKNF--------DGLRFTAALRSEERT--------------R-QLPVLAMVDPDDRG--RMVK--ALEIGNDILQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAGREMLNVTISIGVSATAGEG-DTPEALLKRADEGVYQAKASGRNAVVGKAA-
6	HHPRED-g	1w25_A	0.206	0.766	5.276	threading_6	----------------------------------------SAR-ILVVDDIEA-----NVRLLEAKLTAE-YYE-----------------VSTAMDGPTALAMAARDL-----------------PDIIL---LDV--MMPGMDGF--TVCRKLKDDP-----TTRHIP---VVLITALDGRGDRIQGLESGASLTKPIDDVAKLVIDELRQREASGRRMGVIAGAAARLDGLGGR---------------VLIVDDNERQAQRVAA-ELG--VEHRPV-IESDPKISAGGPVDLVIAAAKNFDGL-RFTAALRSEER--------------TRQLPVL-AMVDPDDRGRMVKALEIGVNDRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHREMLNVTISIGVSAT-AGEGDTPEALLKRADEGVYQAKASGRNAVVGKAAH
7	PPA-I	2v0nA	0.194	0.777	3.269	threading_7	-------------------------------------------------------------------------IEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLP--------------------DIILLDVMMPGMDGFTVCRKLKDDPTTRHVVLITALDGRGDRIQGLESGASDFLTK--PIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLG--------------GRVLIVD-DNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVVNAAAKNFDGLRFTAALRSEERT---------------RQLPVLAMVDPDDRGRMVKALEIDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGRMLNVTISIGVSATAGEGD-TPEALLKRADEGVYQAKASGRNAVVGKAAH
8	SP3	3i5aa	0.224	0.562	4.358	threading_8	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SAMVLL---VD-----------DQAMIGEAVRRGLAGHESIDFHF-----CADPHQAIAQAVQIKPTVILQDLVMPGLDGLTLVREYRS-NPLTRDIPIIVLSTKED-------------------PLIKSAAFAA-------GANDYLV------------------KLPDNIELVARIRYHSRSYMTLLQRDEAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGDEALRQVAKAIRNSCRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHAPVPGSSLTVSIGVATVTPQVGQHSRQLILDADKGLYLAKNNGRNQVAAG---
9	SPARKS	1w25a	0.222	0.789	4.178	threading_9	----------------------------------------SAR-ILVVDD-----IEANVRLLEAKLTAE-------------YY-EVSTA----MDGPTALAMAARDL---------------P-----DIILLDVMMPGMDGFTVCRKLKDDPTTRHVLITALDGRGDRIQGL---ESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELQREASGRRMGVIAGAAARLDGLGGRVLIV---DDN-------------ERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKFDGLRFTAALRSEER---------------TRQLPVLAMVDPDDRGRMVKALEIDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGEMLNVTISIGVSATAGEGD-TPEALLKRADEGVYQAKASGRNAVVGKAAH
10	SAM-T99	2v0nA	0.271	0.457	5.071	threading_10	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGRELNVTISIGVSATAGEGD-TPEALLKRADEGVYQAKASGRNAVV-----

Predicted Tertiary Structure


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TM-score=0.838 to 2v0nA SCOP code=c.23.1.1	TM-score=0.733 to 2v0nA SCOP code=c.23.1.1	TM-score=0.569 to 2v0nA SCOP code=c.23.1.1	TM-score=0.620 to 2v0nA SCOP code=c.23.1.1	TM-score=0.570 to 2v0nA SCOP code=c.23.1.1