Template-based Modeling Results for YEDK_ECOLI


  Submitted Primary Sequence

>Length 222
MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
CCCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHCCCCEEECHHHHHHHHCCCCCCHHHHHHHHCCCCCHHCEEEEECCCCCCCCCCCCHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
322100033212100210121133213232321122211312200000233321101000011121213323100011220221310121132010000010001024334422100012332200000000001244232010000000211310121232100001130022003332213300110011111231010010132223133312201224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
1MUSTER2icuB0.9670.9463.414threading_1--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWDKP-PLINARVETAATSR-FKPLWQHGRAICFADGWFEW------KQPFFIYRADGQPI-FAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWRQE-ISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
2SPARKS2icua0.9760.9325.801threading_2--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGP----PLINARVETAATSR-FKPLWQHGRAICFADGWFEW------KQPFFIYRADGQPI-FAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWRQE-ISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
3PROSPECT22icuA0.9710.9323.609threading_3--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGP----PLINARVETAATSR-FKPLWQHGRAICFADGWFEW------KQPFFIYRADGQPI-FAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWRQEI-SGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
4PPA-I2icuB0.9620.9464.070threading_4--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWDKPP-LINARVETAATSR-FKPLWQHGRAICFADGWFEWKQ------PFFIYRADGQPI-FAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWRQE-ISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
5HHPRED-l2icu_A1.0000.9287.192threading_5--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPG----PPLINARVETAATSR-FKPLWQHGRAICFADGWFEWK------QPFFIYRADGQPIF-AAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREW-RQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQP-
6HHPRED-g2icu_A1.0000.9325.839threading_6--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPG----PPLINARVETAATSR-FKPLWQHGRAICFADGWFEWK------QPFFIYRADGQPIF-AAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREW-RQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
7SP32icua0.9420.9325.805threading_7--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGP----PLINARVETAATSR-FKPLWQHGRAICFADGWFEW------KQPFFIYRADGQPIFAAIGST-PFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWRQEISG-KEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
8SAM-T992icuB0.9810.9465.565threading_8--GRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWDKPP-LINARVETAATSR-FKPLWQHGRAICFADGWFEW------KQPFFIYRADGQPI-FAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREW-RQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV
9MUSTER2bdvA0.3820.9323.142threading_9-CGRIAQKSAPEDYVEILWP------NARLVAGPRYNIPPGTRPLTHRLVDQAEALARLPWGYKPHGSSF--FINAKLETIERHGWPWKLIGTGRILVPADGWYEWKALGPKPAKQPYYIHGDAPLLFAGLSAWRRGELDEAHGFAIVTNDALGGMVDVHDRRPVALPPELAREWVDPATPVARAKEILR-AGLPETAFSWYPVRQEVGSSKYQLPD-----
10SPARKS2bdva0.3670.9325.539threading_10-CGRIAQKSAPEDYVEIL------WPNARLVAGPRYNIPPGTRPLTHRLVDQAEALARLPWGYKPHGSS--FFINAKLETIERHGWPWKLIGTGRILVPADGWYEWKALGPKPAKQPYYIHGDAPLLFAGLSAWRRAELDEAHGFAIVTNDALGGMVDVHDRRPVALPPELAREWVDPATP-VARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPD-----

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.798 to 2bdvA
TM-score=0.996 to native
SCOP code=d.303.1.1
TM-score=0.798 to 2bdvA
TM-score=0.995 to native
SCOP code=d.303.1.1
TM-score=0.792 to 2bdvA
TM-score=0.987 to native
SCOP code=d.303.1.1
TM-score=0.793 to 2bdvA
TM-score=0.985 to native
SCOP code=d.303.1.1
TM-score=0.794 to 2bdvA
TM-score=0.993 to native
SCOP code=d.303.1.1

  Experimental Structure

Download 2icuB
SCOP code=d.303.1.1