Template-based Modeling Results for YEDE_ECOLI

Submitted Primary Sequence

>Length 401
MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGEFTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVKLRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSWFGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQPKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYVQLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFAALMLIIGWEKRFFRRAAPQTAKEIA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGEFTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVKLRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSWFGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQPKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYVQLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFAALMLIIGWEKRFFRRAAPQTAKEIA
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGEFTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVKLRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSWFGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQPKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYVQLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFAALMLIIGWEKRFFRRAAPQTAKEIA
55132111110132001000000000000000001211100000002000100300102031000010131321101212000000000000000101220314224121200000000000000010010010000010001000000000000000000001000011120323233122132223323212211100000000000000010232110000000000000001101000000020000012120010000000000000000020113131120000000000000000000100200001202201020000000000000000000210020002311101002111111000000000000000010013211332223223324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGEFTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVKLRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSWFGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQPKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYVQLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFAALMLIIGWEKRFFRRAAPQTAKEIA
1	SPARKS	1pw4a	0.108	0.928	1.220	threading_1	LVRKALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS--VSDRSNPRVFLPAGL-ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTHWWSQKERGGIVSVWNCAHNVGG------GIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRTPQSCGLPPIEEYKNDTAKQIFMKLLWYIAIANVFVYLLRYGILFALDKSSWAYFLYEYAGIPGTLLCGWMSDK----VFRGN---RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAGTAAGFTGLFGYLGGSVAASAIVGY-------------TVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP
2	PROSPECT2	1jdha	0.097	0.975	1.810	threading_2	SKKEASRHAIMR---SPQMVSAIVRTMQAGTLHNLSHHREGLLAIFKGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG-PQALVNIMRTYTYEKLLWTTSRVLKVLNKPAIVEAGGMQALGLHLTDPAATKQEGMEGLLGTLVQLDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRATEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS------HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPFRMS
3	PPA-I	1pw4A	0.097	0.923	1.444	threading_3	KNF-ALAMPYLVEQFSRG----DLGFALSGISIAY-------GFSKFIMGSVSDRSNPRILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG----IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDTAKQIFMQYFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNP------TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG------WDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP---
4	HHPRED-l	3kcu_A	0.178	0.519	1.089	threading_4	--------------------------------------------------------------------------------------------------------KH-PLKTFYLAITAGVFISIAFVFYI--TATTGTGGMAK-LVGGICFSLGLILCVVCG-----ADLFTSTVLI-VVAK---ASGRIT-WGQLAKVGALLFVLLMWLSGEYMTANGQWGLAVCLGILANLMVCLAVWM--------SYSGRSLMDKAFIMVLPVA-----MFVASGFE--------HSIANMFMIPMGIVIRDFTAVGSHLTVMNFITNLIPVTIGNIIGGGLVGLTYWVIYLR------------------------------------------------------
5	PROSPECT2	1ee4a	0.074	0.905	1.757	threading_5	QELPQMTQQLNSDD-----MQEQLSATVKFRQILSREHRPPIDVVIQVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVAVPLFIQLLYTGS------VEVKEQAIWALGNVATDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC---------------------RGKKPQPDWSVVSQALPTLAKTLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELVQTPALRAVG--NIVTGNDLQTQVVINAGV----LPALRLLLSSPKENIKKEACWTISNIEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI
6	PPA-I	3g61A1	0.079	0.825	1.439	threading_6	------------------------------------------------VSVLTMFRYAGWLDRLYMLVGTLAA--IIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA----YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFH----AIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMF---FQAMATFFGGFIIGFTRQVLTVFFSVLIGAFSV---GQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFREQKFETMYAQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMT------
7	HHPRED-l	3kly_A	0.177	0.536	1.051	threading_7	--------------------------------------------------------------------------------------------------GEGKAKKA-AYKSFLLAISAGIQIGIAFVFYTVVGAHDMPYGVTKL-LGGLAFSLGLILVVITG-----GELFTSSVL-ILVAK---ASGKIS-WKELVRCGSIILVFIMLATRQFMEDGGQLGQAFALGLMCNILVCLAVWMT--------FSARSLTDKVMVLILPVAM-----FVSSGFE--------HCIANMFQVPMAIGIKYPAMTGADLNFVNFIVNLIPVTLGNIVGGGVVGMWYWLIYL-------------------------------------------------------
8	PROSPECT2	3a6pA1	0.103	0.923	1.744	threading_8	MDQVNALTVMMDPNSTQRYRLEALKFCVPCGLRLAEKTQ--VAIVRHFGLQILEHVGMSRLEKVYLKIANGTLNILEEENHIKDALSRIVVEMIKRE---WPQHWPDMLIELDTLLVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD------------TSQESKAQANCRVGVAALNTLAGYMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSR----KGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTLRSSTQMTWGALFRHEIL----------SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYS
9	PPA-I	1pv6A	0.117	0.915	1.262	threading_9	GAYFPFFPIWLHDIISKSDTGIIFAAISLFSLLFQ-PLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF--------GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFKTDAPSSATVANAVGANHSAFSLKLALELFRLWFLSLYVIGVSCTYDVATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGS-------SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLSVNEVA
10	PROSPECT2	3a0oA3	0.064	0.815	1.693	threading_10	GQLSAFADAVAKDPN---HCGWAEFYEKSVEPWLERPVMPEPQPYPNNTRVATLWRQMYIDCQEVIYA-------------IRHLAIAGRVLWLLAVAAWDTKGATSRAYNDEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTREVADHVI---------------------AHARIHVFPYDSH-------AVRSLSAVLTPACIALQGESDEAGEWLDYTVEF----------LATLYSPWAGWAEGPHYWMTGMAYLIEAANLIRSYI-----GYDLYQRPFFQNTGRFPLYTKAPGTRRDSTLGDLPGLKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEM---AFYNYGWWDLNFDDLVY------------RHDYPQVEAVSPADLP

Predicted Tertiary Structure


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TM-score=0.463 to 2q6hA SCOP code=f.54.1.1	TM-score=0.849 to 1pw4A SCOP code=f.38.1.1	TM-score=0.696 to 1wa5B SCOP code=a.118.1.1	TM-score=0.826 to 1pw4A SCOP code=f.38.1.1	TM-score=0.533 to 2abmA SCOP code=f.19.1.1