Template-based Modeling Results for YEDA_ECOLI

Submitted Primary Sequence

>Length 306
MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRFLAAGILLLAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSISWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVIVFAVVLVTLGKYLFPAKPVVAPVIQDASSE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRFLAAGILLLAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSISWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVIVFAVVLVTLGKYLFPAKPVVAPVIQDASSE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRFLAAGILLLAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSISWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVIVFAVVLVTLGKYLFPAKPVVAPVIQDASSE
543332121000000000000000000100032011000000000000000000000212312223200000000000000000000001121011000000000000000000101123222120000000000000010112120100000000000000000000012012211100000000000000000000012322120112000000000000000000000100320211000000000000000000000212012010000000000000011232123233222312432338
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRFLAAGILLLAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSISWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVIVFAVVLVTLGKYLFPAKPVVAPVIQDASSE
1	MUSTER	3zuxA	0.104	0.908	0.995	threading_1	I-SSFIGKTFSLWAALFAAAAFFA-----TFKWAGPY----IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNIAVGVILVGCCPTASNVMTYLARGNVALSVAVTSVSTLTSPLLTLAGEMLQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKI--MESGLLIFAVVVLHNGIGYLLGFFAAKWTGAQKALTIEVGSGLAAALAAAHFAAAPVVPGALFSVWHNISGSLLATYWAAKA----------------
2	SPARKS	2x1gf	0.085	0.964	1.155	threading_2	AGGPKIVLNRLCISLGAYIVHMEVINTFQNQRSADVQLWIMLEVLTAIPE-----EAQVIHTSVKRVVLRAEIAK-RVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERH---STLLLSGITSADPELSILVHRIVQEILHCTD--KPGIYPVEESCSTMALAFWYMLQDEVFAHVRKSEQPDEKSLAKWSSD
3	PROSPECT2	3a6pA1	0.098	1.000	1.659	threading_3	KTQVAIVRHFGLQILEHVVWNGEKVYLKNSVLEEENHIKDALSRIVVEMIKRMLIELDTLSKQGETQTELVMFILLRLAEDVVRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITLLEILCLLLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLELRSSTQMTWGAEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEFDSSTF
4	PPA-I	3zuxA	0.094	0.938	0.977	threading_4	---NILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLEIAVGVILVGCCPTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGAQKALTIEVGSGLAAALAAAHFAAAPVVPGALFSVWHNISGSLLATYWAAKA----------------
5	HHPRED-l	3b5d_A	0.131	0.324	3.657	threading_5	---------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTTLMKFSEG---------------------------F-----T-R--LWPSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS-------------------
6	HHPRED-g	3b5d_A	0.121	0.324	3.268	threading_6	---------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTTLMKFS-E---------------------------GF----T-RLW--PSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS-------------------
7	SP3	2x1gf	0.092	0.990	0.548	threading_7	VRFAGGPKIVLNRLCISLGAYIVHMLGEEVINTFQNQRSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNE-DIIVHIYMLFVSSVERH--STLLLSGITSADPELSILVHRIVQEILHCTDKIYPVEESCSTMALAFWYMLQDEVFAHKCWEYIKPRKSEQPDEKSLAKW
8	SAM-T99	3mp7A1	0.153	0.556	0.717	threading_8	------------------------------------------RFMWTGVALILYYVLAEIPVYPERIQDYFQFLRVVLAGRNGSILTLGI---GPIVTAGIILQLQRVFSVFMCFFAAVWILGGAFGRVAIAVLMILQLAMGGLVSKWGIGSGISLFIAAGVSQTILTRSLNPLTDPNPLTGQPAIVGAIPYFIQHILKGDLWGAIYRGGSAPDM-------------------------------------------------------------------------------------------
9	MUSTER	3g61A1	0.107	0.951	0.804	threading_9	YAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLA-AGRQIHKIRQKFFHAIMIGWFDVHDVRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFLTREQFGITFSFTQAMMYFSYAAC----YLVTQQLMT----------
10	SPARKS	2bkub	0.076	0.984	1.018	threading_10	TADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLPKVATNCSWTIINLVEQLAIYNFYPALVDGLIGAA-NRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVD----ENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNAR

Predicted Tertiary Structure


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TM-score=0.418 to 1wu3I SCOP code=a.26.1.3	TM-score=0.424 to 2q7nB SCOP code=a.26.1.1	TM-score=0.638 to 2vglB SCOP code=i.23.1.1	TM-score=0.615 to 1u6gC SCOP code=a.118.1.2	TM-score=0.426 to 1pw4A SCOP code=f.38.1.1