Template-based Modeling Results for YDJF_ECOLI

Submitted Primary Sequence

>Length 252
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIAFCKDNNIQLVW
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIAFCKDNNIQLVW
CCHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCCEEEEECCEEECCCCCEECHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCEEEEEEECHHHCCEEEECCCCCHHHHHHHHHCCCEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIAFCKDNNIQLVW
432320131012102524202022003203112310220032025211001001000012222233231222221113113100210130033210000100000110031034331010000002001101223020000102013322001031022003302000000001001122100112221010121003303000000131313220001001022010000132012300210443311002
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIAFCKDNNIQLVW
1	SPARKS	2w48a	0.173	0.917	1.280	threading_1	SDDIRLIVKIAQLYYEQD-MTQAQIARELGIYRTTISRLLKRGREQGIVT------IAINYDYNENLWLEQQLKQKEEQLSAMGQHGALLVEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAADSLDVALVGGSPAIRDGAFYGSEESDDLNARHV-AGDICSRFYDINGGLVDTNMSELSIEMAKLRQARYSIGIAGEEK--YSGILGALHGRYINCLVTN----RETAELLLK-------
2	PROSPECT2	2w48A	0.133	0.925	1.640	threading_2	SDDIRLIVKIAQ-LYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINY----------DYNENLWLEQQLKQKQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAAR------LKAESHLADFPALSQHFKTISSYWDLDVALVGIGSPAIRDGANWHAFYGSEESDDLNA--RHVAGDIGLVDTNMSEKTLSIEMAKARYSIMGEEKYSGILGALHGRYINCLV
3	PPA-I	1uj5A	0.132	0.603	1.512	threading_3	-------------------------------------------------------------------------RPLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELAELKGVVGVPTSRATEELAKREGIPLV--------------------DLPPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVP-------VLGRGPPVEIVPFGYRATLKAIADLGGEPEL
4	SP3	1vb5a	0.112	0.921	1.030	threading_4	--LPERVLEILREMKREAKKGAEAFLTLAELDESLLEDAIMELRE--EVVKVNPSMALARFIPVTNRRALEFLRRMEEAKRELASIGAQLIDDGDVIIHSFSSTVLEIIRTAKEKKRFKVILEGLHLARELEFSGIEFEVI---------------TDAQMGLFEASIAIVGADMITKDGYVVNKA-GTYLLALACHENAIPFYVAAETYKFHPTLKSGDVMLMERDLIRGNVRIRNVLFDVTPWKYVRGII
5	HHPRED-l	3rrl_B	0.104	0.647	3.435	threading_5	-------------------------------------------------------------------------------REAIIKRAAKELKEG-YVNLGIGLPT-LVANEVS-G-NIVFQSENGLLGYLEGSVDADLINAGKEVVPGASFFNSADSFA-IRGGHIDLAILGG-EVSQNGDLANW-IPKKLIK-DLVHGAKKVIVI-EHCNKGESKVKKECSLGVVHQLITDLAVFESLDQVKEKTEAEFR-
6	SAM-T99	1i1gA1	0.167	0.190	1.223	threading_6	--IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	HHPRED-g	3rrl_B	0.110	0.651	3.185	threading_7	-------------------------------------------------------------------------------REAIIKRAAKELKEG-YVNLGIGLPT-LVANEVS-G-NIVFQSENGLLGYPLESVDADLINAGKEVVPGASFFNSADSFA-IRGGHIDLAILGG-EVSQNGDLANW-IPKKLIK-DLVHGAKKVIVI-EHCNKGESKVKKECSLGVVHQLITDLAVSLDQVKEKTEAEFEVRL
8	MUSTER	2w48B	0.176	0.901	0.778	threading_8	SDDIRLIVKIAQLYYEQD-MTQAQIARELGIYRTTISRLLKRGREQGILKQKFG-AVVASSDGLL----------EEEQLSAMGQHGALLVEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAADSLDVALVGGSPAIRDGAFYGSEESDDLNARHV-AGDICSRFYDINGGLVDTNMSELSIEMAKLRQARYSIGIA-MGEEKYSGILGALHGRYINCLVTN----RETAELLLK-------
9	SP3	1ks2a1	0.150	0.556	1.177	threading_9	--------------------------------------------------------------------------TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTGQIEGAVSSSDASTEKLKSLGIHVF--------------------DLNEVSLGIYVDGADEINGH--QIKGGGAALTREKIIASVAEKFICIADASKQ-------------VDIL-ANRGADVALIGT--PDGVKTIV
10	SAM-T99	3ixqA	0.190	0.544	1.568	threading_10	--------------------------------------------------------------------------SNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNR---------------IREEELTVFGIPTSFEAKMLAMQYEIPLVTLDEYDVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYANEFVVLVDESKL--------------------------VKKLGEKFPIPVEV

Predicted Tertiary Structure


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TM-score=0.601 to 2gnpA SCOP code=c.124.1.8	TM-score=0.605 to 2gnpA SCOP code=c.124.1.8	TM-score=0.622 to 1uj5A SCOP code=c.124.1.4	TM-score=0.835 to 1vb5B SCOP code=c.124.1.5	TM-score=0.629 to 2nrcB SCOP code=c.124.1.3