Template-based Modeling Results for YDJA_ECOLI

Submitted Primary Sequence

>Length 183
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKASTSINVPDPTPFVTYF
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKASTSINVPDPTPFVTYF
CHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHEEEC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKASTSINVPDPTPFVTYF
420121013111023023321223102100200120133421200000002131122002002200322223331023012121301000000021333331231110000000000000001221000001011122231013002034322000000000132423332323312200211
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKASTSINVPDPTPFVTYF
1	MUSTER	3bm1A	0.955	0.967	3.474	threading_1	MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLNVPDPTPF------VTYF
2	SPARKS	3bm1a	0.989	0.967	3.690	threading_2	MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLNV------PDPTPFVTYF
3	PROSPECT2	3bm1A	0.972	0.967	3.650	threading_3	MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLNVPDP------TPFVTYF
4	PPA-I	3bm1A	0.932	0.967	3.692	threading_4	MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLNVPDPTPFVTYF------
5	HHPRED-l	2ifa_A	0.152	0.973	2.476	threading_5	SNFLDLQKQRRSIYALGKTDLSKAELVALIQNIKQAPSAFNSQTSRALVLFGQDSQDFWNKIAYSELEKVTPAEAFAGTKASFAAGVGTILLFEDQALYAENFQPWSEQAHGIALYAIWLALAEQNIG-SVQHYNPLVDAQVAEKYDLPTNWK-RAQIPFGSIEAPAGEKE-F-ADQERFKV-
6	HHPRED-g	3bm1_A	1.000	0.967	2.160	threading_6	MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQL------NVPDPTPFVTYF
7	SP3	3bm1a	0.989	0.967	3.695	threading_7	MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLNV------PDPTPFVTYF
8	SAM-T99	3bm1A	0.960	0.945	3.921	threading_8	MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLNVPDPTP----------F
9	MUSTER	3k6hA	0.293	0.989	3.111	threading_9	IKLLDYLRVRRSTPQLSEPGPSKGEIEEILRLAVRVPDHGKLAPWRFVVYRGEERVRLSEAALRIALEKDLDLQQQEAERTRFTRAPVVIAVISTAKPHFKIP-EWEQVSAGAVCLNVIFAANASGFAANWLTEWLAFDPAFLAEIGVSAEEKVAGYIHIGSTTFPPVE-RPRPELADVVTWV
10	SPARKS	3k6ha	0.309	0.989	3.615	threading_10	IKLLDYLRVRRSTPQLSEPGPSKGEIEEILRLAVRVPDHGKLAPWRFVVYRGEERVRLSEAALRIALEKDLDLQQQEAERTRFTRAPVVIAVISTAKPHFKIPEWEQV-SAGAVCLNVIFAANASGFAANWLTEWLAFDPAFLAEIGVSAEEKVAGYIHIGSTTFPPV-ERPRPELADVVTWV

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.712 to 1ywqA TM-score=0.931 to native SCOP code=d.90.1.1	TM-score=0.712 to 1ywqA TM-score=0.931 to native SCOP code=d.90.1.1	TM-score=0.711 to 1ywqA TM-score=0.935 to native SCOP code=d.90.1.1	TM-score=0.710 to 1ywqA TM-score=0.929 to native SCOP code=d.90.1.1	TM-score=0.711 to 1ywqA TM-score=0.927 to native SCOP code=d.90.1.1

Experimental Structure

Download 3bm1A

SCOP code=d.90.1.1