Template-based Modeling Results for YDIY_ECOLI

Submitted Primary Sequence

>Length 252
MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFEGNLNAGYLAQSGNTKSSSLTADTTMTWYGHTTAWSLWGNASNTSSNDERSSEKYAAGGRSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRYDKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHFGLKVAYNVTWNSEPPESAPEHTDRRTTLSLGYSM
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFEGNLNAGYLAQSGNTKSSSLTADTTMTWYGHTTAWSLWGNASNTSSNDERSSEKYAAGGRSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRYDKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHFGLKVAYNVTWNSEPPESAPEHTDRRTTLSLGYSM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCEEEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFEGNLNAGYLAQSGNTKSSSLTADTTMTWYGHTTAWSLWGNASNTSSNDERSSEKYAAGGRSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRYDKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHFGLKVAYNVTWNSEPPESAPEHTDRRTTLSLGYSM
542131101100000000000000001111112333232433020001000002212131110201010212142101101010112334323111201000202010232000000010111322012020001101011002132111201001001122224423222000100010101113202011001012342120201000201013200010000011223123323442112010000023
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFEGNLNAGYLAQSGNTKSSSLTADTTMTWYGHTTAWSLWGNASNTSSNDERSSEKYAAGGRSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRYDKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHFGLKVAYNVTWNSEPPESAPEHTDRRTTLSLGYSM
1	MUSTER	3aehA	0.106	0.972	1.107	threading_1	MARNDGQGKAAATFMHISYNNFITEVDNLNKRMGDLRDINGEWVRLLNGSGSADGGTDHYTLLQMGADRKHELGSMDLFTGVMATYTDDLYSGKTKSWGGGFYASGLFRSGAYFDVIAKYIH-NFAGAGKQNFRSHSLGYRYHLTDTTFVEPQAELVWGRLQGQNSVNPLVGRTGVVSGKTFSGKDWAGLHYEFDLTDSKDSRMLYGVGLNARFGDNTRLGLEVERSAFGKY------NTDDAINANIRYSF
2	SPARKS	3kvnx	0.073	0.972	1.572	threading_2	LSAPWELTLLPEMAHGTLRAYQDELRSQWQADWENWQNVGQWRGFVGGGGQRLDQDSGDGNGYNLTLGGSYRDEAWRAGVAAGFYRQGAKDSDYRMNSYMASAFVQYQENRWWADAALTGGYLDYDDLKRKFALGGGLGYDIAQQADSPWHLSPFVSADYARVEDDQKRSSKRLGAGLQGKYAFGSDTQLFAEYAHEREQDHLNRVSLGFSQKLAPELSLRGGYNWRKGED-------DTQQSVSLALSLDF
3	PROSPECT2	1uynX	0.126	0.944	1.848	threading_3	-------AATVYADSTAAHADMQGRRLKAVSDGLDHNGTGLRVIAQTQQDGGTWEQGGVEGKMRGSTQTAKTGENTTAAAMGRSTWSENSANAKTDSISLFAGIRHDAGDIGYGRYKNSISRSTGADGSVNGTLMQLGALGGVNVPTGDLTVEGGLRYDLLKQDASLTEGTLVGLAGLKLSQPLSDKAVLFATAGVETGPHTRLVAGLGADVEFGNGWNGLARYSYAGSK-------QYGNHSGRVGVGYRF
4	PPA-I	3aehA	0.102	0.968	1.748	threading_4	--GTMARNDGQGKAAATFMHISYNNFITEVDNLRDINGEAGTWVRLLNGSGSADGGFDHYTLLQMGADRKHELGSMDLFTGVMATYTDDLYSGKTKSWGGGFYASGLFRSGAYFDVIAKYIHNNFAGAGKQNFRSHSLGYRYHLTDTTFVEPQAELVWGRLQGQNSVNPLVGRTGVVSGKTFSGKDWAGLHYEFDLTDSRDSRMLYGVGLNARFGDNTRLGLEVERSAFGKY------NTDDAINANIRYSF
5	HHPRED-l	1uyn_X	0.164	0.893	1.163	threading_5	-------------AATVYADSTARRLKAVSDGLDHNGTGLRVIAQTQQDGGTEQGGVERGSTQTVGIAAKT-GENTTAAATLGMGRSTNSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSIVNTLMQLGALGGVNVP---TGDLTVEGGLRYDLLKQDNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVE--PHTRLVAGLGADVEFGNGWNGLARYSYAGSK-------QYGNHSGRVGVGYR-
6	HHPRED-g	3nb3_A	0.102	0.508	2.499	threading_6	---------------------------A-----P----KDNTWYTGAKLGWSQ-----HENKLGAGAFGGYQVNPVGFEMGYDWLGRMPY-AYKAQGVQLTAKLGYPITDDLDIYTRLGWRADTYSNHDTGVSPVFAGGVEYAITPEIATRLE----YQWTN---------GMLSLGVSYRFG---------------------------------------------------------------------
7	SP3	3aeha	0.107	0.968	1.276	threading_7	MARNDGQGKAAATFMHISYNNFITEVDNLNKRMGDLRDINGETWVRLLNGSGSADGGDHYTLLQMGADRKHELGSMDLFTGVMATYTDDLYSGKTKSWGGGFYASGLFRSGAYFDVIAKYIHNNFAGAGKQNFRSHSLGYRYHLTDTTFVEPQA--ELVWGRLQGQNSVNPLVGRTGVVSGKTFSGKAGLHYEFDLTDSKDSRMLYGVGLNARFGDNTRLGLEVERSAFGKY------NTDDAINANIRYSF
8	SAM-T99	2jqyA	0.189	0.734	1.398	threading_8	-------------------------------------EERNDWHFNIGAMYEIE-------------NVEGYGEDMDGLAEPSVYFNAANGWRIALAYYQEGPVDYSAGKRGTWFDRPELE----------------VHYQFLENDDFSFGLTGGYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSD-SDKFHYAGVGVNYSF
9	MUSTER	3kvnX2	0.091	0.964	1.051	threading_9	PWELTLLPEMAHGTLRAYQDELRSQWQADWE-NWQNVGQWRGFVGGGGQRLDFDSQDSDGNGYNLTLGGSYRIDEAAGFYRQKLEAGAKDSDYRMNSYMASAFVQYQ-ENRWWADAALTGGYLDYDDLKRKFALGGGLGYDIAQQADSPWHLSPFVSADYARVEDDQKRSSKRLGAGLQGKYAFGSDMSLRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGGYNWRKGED-------DTQQSVSLALSLDF
10	SPARKS	1uynx	0.145	0.929	1.148	threading_10	------AATVYADSTAAHADMQGRRLKAVSDGLDHNGTGLRVIAQTQQDGGTWEQGGKMRGSTQTVGIAAKTGENAATLGMGRSTWSENSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGR-----YKNSISRSTGADEHAEGSPTGDLTVEGGLRYDLLKQDNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNTRLVAGLGADVEFGNGWNGLARYSYAGSKQY-------GNHSGRVGVGYRF

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.720 to 1uynX SCOP code=f.4.5.1	TM-score=0.778 to 1uynX SCOP code=f.4.5.1	TM-score=0.762 to 1uynX SCOP code=f.4.5.1	TM-score=0.736 to 1uynX SCOP code=f.4.5.1	TM-score=0.686 to 1uynX SCOP code=f.4.5.1