Template-based Modeling Results for YDIS_ECOLI

Submitted Primary Sequence

>Length 429
MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL
CCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEECCCEEEEEEEEEECCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEECCHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL
553220000000000000000100131201000012232211310111201020022002212221223220121200001332001011222323123310000102200210021034120200210202000232220100212212010000000311102002102123223222000001100202231022213121330000000111231100000000242100000000112122233202200210331020222022132231202001310121123111300000000010012101213001000000200010011023323222200220131012100021021012002103222001200200020012002132323220121011003401012002100200233
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL
1	MUSTER	2gmhA	0.249	0.963	2.289	threading_1	VNAEEADVVIVGAGPAGLSAATRLKQLDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKKGAPLNTPVTEDRFGILTEKYRIPVPILPGLP-MNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHDGSVKGIATNDLELHAKVTIFAEGCHGHLAKQLDLRANCEPQTYGIGLKELWVIDEK--------KWKPGRVDHTVGWPLRHTYGGSFLYHLNELLALGFVVGL-DYQNPYLSPFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMN--VPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKHVTEYEDNLKNSWVWKELYSVRNIRPSCHGI--LGVYGGMIYTGIFYWI-FRGMEPWTLKHKGSDSCTPIEY-QISFDLLSSVALS
2	SPARKS	2gmha	0.262	0.925	4.602	threading_2	MEREEADVVIVGAGPAGLSAATRLKQLDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEGAPLNTPVTEDRFGILTEKYRIPVPILPGLP-MNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHDGSVKGIATNDLELHAKVTIFAEGCHGHLAKQLDLRANCEPQTYGIGLKELWVIDEKK--------WKPGRVDHTVGWPLDHTYGGSFLYHLNEGLALGFVVGL-DYQNPYLSPFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMN--VPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKHVTEYEDNLKNSWVWKELYSVRNIRPSCHGIL--GVYGGMIYTGIF-YWIFRGMEPWTLKHKGSDSD-----------------QL
3	PROSPECT2	3atqA	0.180	0.935	4.297	threading_3	MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWIGDKPCGDA-VSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQTVWTVN----------GEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVNEELTVYSKVVVEATGYSRSFRSKLPPEEDLDDKDADVAYREVLLTKED--------IEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGG---MGYPSIHEYYKKY--LDKYAPDVDKSKLLVKGGALVPTRRP--LYTMAWNGIIVIGDSGFTV--NPVHGGGKGSAMISGYCAAKAILSAFETGDFSASGLWDMNICYVNEYKQASLDIFRRFLQKLSNDDINYGMKKIIKEEDLLEASEKGDLHLSVADKAMRVISGLGRPSLLFKLKAVAESM
4	PPA-I	3cgvA	0.189	0.853	2.567	threading_4	--GETYDVLVVGGGPGGSTAARYAAKYGLKTLIEKRPE-IGSPVRCGEGLSKGILNEADIKA-DRSFIANEVKGARIYG---------PSEKRPIILQNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKINEIVDVRAKVIAADGFESEFGRWAGLKSVLARNDIISALQYRINVD-----------VDPDYTDFYLGSIAPA--GYIWVFPKGEGANVGIGSSINWIHNRFELKNYLDRFIENHPGLKKG---------QDIQLVTGGVSVSKVKPITPGLLVGDAARLID--PITGGGIANAIVSGYAAQVTKEAIESNDYSP---QQKYEKLIKERFERKHLRNWVAKEKLALSDDTLDKLVDIVSEQVLTTISVEAILKAIAEKYP-----------------------
5	HHPRED-l	2gmh_A	0.232	0.963	2.595	threading_5	MEAEEADVVIVGAGPAGLSAATRLKQKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEGAPLNTPVTEDRFGILTEKYRIPVPILPGL-PMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGFERGLELHAKVTIFAEGCHGHLAKQLYKKFNCEPQTYGIGLKELWVIDEKKW--------KPGRVDHTVGWPLDYGGSFLYHNEGEPLLALGFVVG-LDYQNPYLSPFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFM--NVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTITEYEDNLKNSWVWKELYSVRNIRPSCHGI--LGVYGGMIYTGIFYWI-FRGMEPWTLKHKGSDSCTPIEYDLLSSVALSGTNH-
6	HHPRED-g	2gmh_A	0.254	0.956	5.583	threading_6	MEAEEADVVIVGAGPAGLSAATRLKQLDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEGAPLNTPVTEDRFGILTEKYRIPVPILPG-LPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFEDGSVKGIATNDLELHAKVTIFAEGCHGHLAKQFDLRANCEPQTYGIGLKELWVIDEKK--------WKPGRVDHTVGWPLDHTYGGSFLYHLNEGLALGFVVGL-DYQNPYLSPFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFM--NVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTVTEYEDNLKNSWVWKELYSVRNIRPSCHGI--LGVYGGMIYTGIFY-WIFRGMEPWTLKHKGSDSDQ----LKPAKDCTPIEYPK
7	SP3	2gmha	0.257	0.963	4.855	threading_7	MEREEADVVIVGAGPAGLSAATRLKQLDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEGAPLNTPVTEDRFGILTEKYRIPVPILP-GLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAELFHEDGSVKGIATNDLELHAKVTIFAEGCHGHLAKQLDLRANCEPQTYGIGLKELWVIDEKK--------WKPGRVDHTVGWPLDHTYGGSFLYHLNEGLALGFVVGL-DYQNPYLSPFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMN--VPKIKGTHTAMKSGTLAAESIFNQLTSENTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGI--LGVYGGMIYTGI-FYWIFRGMEPWTLKHKGSDSDQLKPAKDISFDLLSSVA-L
8	SAM-T99	2gmhA	0.252	0.972	9.168	threading_8	RFAEEADVVIVGAGPAGLSAATRLKQLDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKAPLNTPVTEDRFGILTEKYRIPVPI-LPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFEDGSVKGIATNDLELHAKVTIFAEGCHGHLAKQLYKKFDLRPQTYGIGLKELWVIDEKKWK--------PGRVDHTVGWPLDHTYGGSFLYHLNEGLALGFVVGLDY-QNPYLSPFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMN--VPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVYGGMIYTGIFYWIFRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLL
9	MUSTER	3atqA	0.182	0.932	2.027	threading_9	MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWIGDKPCGDAVS-KAHFDKLGMPYPKGEELENKINGIKLYSPDMQTVWTV----------NGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLEELTVYSKVVVEATGYSRSFRSKLPITEDLDDKDADVAYREVLLTKED--------IEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQ-GGMGYPS-----IHEYYKKYDKYAPDVDKSKLLVKGGALVPTRR--PLYTMAWNGIIVIGDSGFTVN--PVHGGGKGSAMISGYCAAKAILSAFETGDFSASGLWDMNICYVNEAKQASLDIFRRFLQKLSNDDINYGMKKIIKEEDLLEASEKGDLHLSVADKAMRVISGLGRPSLLFKLKAVAESM
10	SPARKS	3atqa	0.172	0.932	3.688	threading_10	MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPRIGDKPCGDA-VSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQTVWTVN----------GEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNLTVYSKVVVEATGYSRSFRSKLPPEEDLDDKDADVAYREVLLTKED--------IEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGG---MGYPSIHEYYKKY--LDKYAPDVDKSKLLVKGGALVPTRR--PLYTMAWNGIIVIGDSGFTVN--PVHGGGKGSAMISGYCAAKAILSAFETGDFSASGLWDMNICYVNEY-GAKQASLDIFRRFLQKLSNYGMKKKIIKEEDLLEASEKGDLHLSVADKAMRVISGLGRPSLLFKLKAVAESM

Predicted Tertiary Structure


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TM-score=0.824 to 2gmhA SCOP code=c.3.1.2	TM-score=0.704 to 1phhA SCOP code=c.3.1.2	TM-score=0.796 to 2gmhA SCOP code=c.3.1.2	TM-score=0.712 to 1phhA SCOP code=c.3.1.2	TM-score=0.693 to 1phhA SCOP code=c.3.1.2