Template-based Modeling Results for YDIR_ECOLI

Submitted Primary Sequence

>Length 312
MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAVMPYGPKCLYVLAQNDALQRTENYAESIAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSHQCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAVMPYGPKCLYVLAQNDALQRTENYAESIAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSHQCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR
CCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCEEEEECCCHHHHCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEECCEEEEEECCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHEEECCCEEECCCEEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHCCEEEEEEHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAVMPYGPKCLYVLAQNDALQRTENYAESIAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSHQCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR
555221000001123211100000241243000000123102101411120000012311121021003000100433211000000132031000100120210000100102123230001010111100010102221100001211222222322330211102221244322021222222222302302100011211223300300120023021200001000212421322110011011020100000002021200010220200000141430100200100000001300210123135
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAVMPYGPKCLYVLAQNDALQRTENYAESIAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSHQCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR
1	MUSTER	2a1uA	0.276	0.974	3.084	threading_1	---FQSTLVIAEHANDTLNTITAATRLGGEVSCLVAGTKVAQDLCKVGIAKVLVAQHDYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPD---TFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGG-SASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDA-GFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK
2	SPARKS	1efva	0.272	0.968	7.234	threading_2	----QSTLVIAEHANDTLNTITAATRLGGEVSCLVAGTKCDKVAQDLGIAKVLVAQHDYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPD---TFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGG-SASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDA-GFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK-
3	PROSPECT2	1efva	0.272	0.968	4.777	threading_3	----QSTLVIAEHANDTLNTITAATRLGGEVSCLVAGTKCDKVAQDAGIAKVLVAQHDVYKLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPD---TFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGS-ASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVD-AGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL-K
4	PPA-I	2a1uA	0.270	0.974	4.202	threading_4	---FQSTLVIAEHANDTLNTITAATRLGGEVSCLVAGTKCDKVAQDLGIAKVLVAQHDYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPD---TFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGS-ASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDA-GFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK
5	HHPRED-l	1efv_A	0.275	0.968	7.662	threading_5	----QSTLVIAEHANDTLNTITAATRLGGEVSCLVAGTKVAQDLCKVGIAKVLVAQHDYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPD---TFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEK-ASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVD-AGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK-
6	HHPRED-g	1efv_A	0.275	0.968	6.751	threading_6	----QSTLVIAEHANDTLNTITAATRLGGEVSCLVAGTKCAQDLCKVGIAKVLVAQHDYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTF---VRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEK-ASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDA-GFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK-
7	SP3	1efva	0.272	0.968	6.961	threading_7	----QSTLVIAEHANDTLNTITAATRLGGEVSCLVAGTKCDKVAQDLGIAKVLVAQHDYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPD---TFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSAS-SEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDA-GFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK-
8	SAM-T99	2a1uA	0.270	0.974	6.150	threading_8	---FQSTLVIAEHANDSLNTITAATRLGGEVSCLVAGTKCDDLCKVAGIAKVLVAQHDVYKGLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPD---TFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSA-SSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVD-AGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK
9	MUSTER	3cluD	0.252	0.978	2.924	threading_9	----SKILVIAEHRRNSLELIGAANGLEDKVVVAVIGSQFVPALSVNGVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPSVQSRSQ-NKDYVEVGGGNDIDITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSKPIADA-GWLPKSRQVGQSGKVVGSKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQLA-
10	SPARKS	1efpa	0.276	0.952	6.862	threading_10	-----AVLLLGEVTNGATAKAVAAVKALGDVTVLCAGASAKAAAEEAGVAKVLVAEDAYGHRLAEPTAALIVGLAG--DYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILDAD---TFERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEG--GTAPVTETAAAADPGLSSWVADEVAESDRPELTSARRVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDS-GYAPNDWQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL--

Predicted Tertiary Structure


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TM-score=0.962 to 2a1uA SCOP code=c.26.2.3	TM-score=0.958 to 2a1uA SCOP code=c.26.2.3	TM-score=0.954 to 2a1uA SCOP code=c.26.2.3	TM-score=0.956 to 2a1uA SCOP code=c.26.2.3	TM-score=0.962 to 2a1uA SCOP code=c.26.2.3