Template-based Modeling Results for YDIK_ECOLI

Submitted Primary Sequence

>Length 370
MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK
5532422431010000000000000000100110020000000000000100120131112330100110111210222111111121003101200300231312002120034000002100200121022202100120221012002100000120020001000000000001120310020012002200122022002000200200010000000020000000000020211100000000001031001000000000011123101000000000000001200200004211301100000000000100000000001000000120010003313332321330132123234344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK
1	PROSPECT2	1ejlI	0.109	0.943	1.786	threading_1	GTVNWSVEDIVKGILESQLQATQAARKLLSREKQ------PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGIPAFISLLASPHIAGDGSAFRDL--VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLDAVEQILPTLVRLADSCWAISYLTDGPNERIEMVVPQLVKLLGATELPIVTPALRAIGNIVTGQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVFLVGVLSKADFKTQKEAAWAITNYTSGGTVE------------QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA-EKLGETEKLSIMIEEQRHENE
2	PPA-I	1wa5B	0.081	0.900	1.275	threading_2	LTNISGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCN---------AMEPILGLFNSN----KPSLIRTATWTLSNLCRGKKPQPDWSVVSQ-------ALPTLAKLIYSMDTETLVDACWAISYLSDG----PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSENIKKEACWTISNITAGNTEQIQAVIDAN-------------LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ
3	PROSPECT2	1jdha	0.097	1.000	1.775	threading_3	AVVNLIRKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAISPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSQRLVQNCLWTLRNLSDEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIAQDKEAAEAIEALHSRNE
4	PPA-I	3g61A1	0.106	0.765	1.223	threading_4	----------------------------------------------------VSVLTMFRYAGWLDRLYMLVGTLAAIILPMMLIFGDMTDSFASVGNVSKNST----------------------------NMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLA--AGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFF-----QAMATFFGGFIIGFTRIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGVVSLTREQKFETMYAQSLQIPYR
5	PROSPECT2	1b3ua	0.090	0.992	1.762	threading_5	FTTLVGGPEYVHCLLPPLESLAVRDKAVESLRAISFTSRTSACGLFSVCELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE---LDNVKSEIIPMFSNLASDEAQLLPQEDLEALVMTKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEVIMSQILPCIKELVSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGQKIGPILDNSTLQSEVKPILEKLTQDQD
6	PPA-I	3zuxA	0.076	0.786	1.194	threading_6	ILSK-----ISSFIGKTFSLWAALFAAAAFFAPYIPWLLGIIMFGMGLTLKPSDFDILF--KHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMEFAVVVLHNGIGYLLGFFAAGLPYDAQKALTIEVGM-----QNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA-------------------------------------------------------------------
7	PROSPECT2	1ee4a	0.095	0.968	1.748	threading_7	-------QELPQMTQQLNSDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAVPLFIQLLYTGSVAGDSTDYRDY--VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCQPDWSVVSQALPTLAKLVDACWAISYLSDGPQEAIQAVIDRLVELLSHESTLVQTPALRAVGNIVTGQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL---DALENILKMGEADKEARGLNINENADFIEKIFNCQQNEN
8	PPA-I	1b3uA	0.088	0.986	1.186	threading_8	FSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSQDSVRLLAVEACVNIAQLLPKSWRVRYMVADKFTELQKAVGPEITKVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFIIPKVLAMSGDPN----YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV-RFNVAKSLQKIGPILD
9	PROSPECT2	1w63A	0.079	0.995	1.689	threading_9	MPAPIRNTYRCRNVAKLLYMHMGQLECLKLIASQKFTDKRIGYLGAMLLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCLCAVHVIRKVPELMEMFLPNLLNEKNHGVLHTSVVLLTEMSPDMLAHFRKLVPQLVRILKNLIMFLQVRILRLLRILGNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDYAPSKRWHIDTIMRVLTTAGSYVLYKAILGDYSQQPLVQVAAWCIGEYGEDEVLDILESVLISVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSMEK
10	PPA-I	2jlnA	0.112	0.938	1.120	threading_10	TVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTA----IMIFVGGWIAVVVSIHDIVKASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWN-----PVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVIVSAVVGLL-MMPWQFAGVLNTFLN-----LLASALGPLAGIMISDYFLVR----RRRISLHLAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAKTFPLFSEAESRNEDYLRPIG----

Predicted Tertiary Structure


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TM-score=0.791 to 1t5jA SCOP code=a.209.1.1	TM-score=0.768 to 1ialA SCOP code=a.118.1.1	TM-score=0.792 to 1wa5B SCOP code=a.118.1.1	TM-score=0.520 to 2q6hA SCOP code=f.54.1.1	TM-score=0.639 to 1xm9A SCOP code=a.118.1.24