Template-based Modeling Results for YDIF_ECOLI

Submitted Primary Sequence

>Length 531
MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISELAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQTQLYGGAPVNRFISGDFTLDDSTKLSLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEITDGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEAAH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISELAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQTQLYGGAPVNRFISGDFTLDDSTKLSLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEITDGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEAAH
CCCCCHHHHCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHEEECCCCEEEEEEECCCHHCCCCCEECCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEECCCCEEEEEECCCCCCCEECCCCCEEEECCCCEEECHHHHHHHHHCCCCCEEEECHHHHCCCCCCHHHHCCCCCCCCCCCEEECCCCCEEEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCEEEECCCHHHHHHCCCCEEEEECCEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCEECCCCCCCCHHHCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISELAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQTQLYGGAPVNRFISGDFTLDDSTKLSLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEITDGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEAAH
533233232313131110320031032300000000000010021002001211342321310000000021222330010002221020000001120330021023220100000100002001101151100002000111112323213223223331211020332200012002100000100201241000012201101000001003421100001012003422021100100000000001133322222111113211231223322322222322210011002203311000000100300021021211211000001101121010312000000211000100100010210100000000010133010000201020200100000011031000001000221312022130101230424322421020102031024321211000110001024310200100320212200133030201013303202320013111112124235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISELAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQTQLYGGAPVNRFISGDFTLDDSTKLSLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEITDGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEAAH
1	MUSTER	2ahuA	0.970	0.951	3.876	threading_1	---VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVYLD-ALVIAQAVHNNG--GIVQVQKV-KKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD------LPLNQRKLVARRALFE-RKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIG-----GITSGANVNTRAILD-TSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKI-GTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILD-KDFTPVISPELK-LDERLFIDAAG-FVLPEA--
2	SPARKS	2ahua	0.943	0.951	9.520	threading_2	---VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVYLDALVIAQAVH-NNGGIVQVQK---VKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD------LPLNQRKLVARRAL-FERKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSGANV-----NTRAILDT-SQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKI-GTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILD-KDFTPVISPELKLD-ERLFIDAAGF-VLPEA--
3	PROSPECT2	2ahuA	0.899	0.951	5.763	threading_3	VKP---PRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVYLD-ALVIAQAVHNNGGIVQVQK---VKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD-------LPLNQRKLVARRALFERKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSGANV------NTRAILDTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGK-IGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQ-KDILDKDFTPVISPELKLD-ERLFIDAAGFVL---PEA
4	PPA-I	2ahuA	0.939	0.951	8.699	threading_4	---VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVYLD-ALVIAQAVHNNGGIVQVQKV---KKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLDLPLN-------QRKLVARRALFERKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIG-----GITSGANVNTRAILD-TSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKI-GTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDIL-DKDFTPVISPELK-LDERLFIDAAG-FVLPEA--
5	HHPRED-l	2ahu_A	0.994	0.951	7.178	threading_5	---VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEV-YLDALVIAQAVHNNGGIV--QVQK-VKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD------LPLNQRKLVARRALFE-RKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITS-----GANVNTRAILD-TSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKI-GTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDK-DFTPVISPELKL-DERLFIDAA-GFVLPEA--
6	HHPRED-g	2ahu_A	0.994	0.951	6.419	threading_6	---VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEV-YLDALVIAQAVHNNGGIV--QVQK-VKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD------LPLNQRKLVARRALFE-RKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITS-----GANVNTRAILD-TSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKI-GTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDK-DFTPVISPELKL-DERLFIDAA-GFVLPEA--
7	SP3	2ahua	0.937	0.951	9.571	threading_7	---VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVYLDALVIAQAVHN---NGGIVQVQ-KVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD------LPLNQRKLVARRAL-FERKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIG-----GITSGANVNTRAILDT-SQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKI-GTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILD-KDFTPVISPELKLD-ERLFIDAAGFV-LPEA--
8	SAM-T99	2nrcB	0.244	0.847	6.667	threading_8	-----------TKFYTDAVEAVKDIPNGATVLVGGFGLA-GIPENLIGALLKT-----GVKELTAVSNNAGVD--NFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAA-----ETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKEKLGDN-------------VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNM---TVHLQSENGILGLGPYPGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKVKGMGGAMDLVSSAKKVVVTMEHSAKG-------NAHKIMEKCTLPL----------TGKQCVNR-----IITEKAVFDVRKKGLTLIELWEGLTVD-DIKKSTGCDFAVSPKLIPMQ------------------
9	MUSTER	2nrcB	0.238	0.855	2.461	threading_9	------------TKFYDAVEAVKDIPNGATVLVGGFGL-AGIPENLIGALLKT------VKELTAVSNNAGVD--NFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAA-----ETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEK-------------RIERLSVRKEKLGDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMQSENGILGLGPYPLADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKVKGMGGAMDLVSSAKKVVVTMEHSAK-------GNAHKIMEKCT----------LPLTGKQCVN-----RIITEKAVFDVDKKGLTLIELWEGLT-VDDIKKSTGCDFAVSPKLIPMQQVT---------------
10	SPARKS	1o9la	0.241	0.851	7.486	threading_10	---------TKF--YTDAVEAVKDIPNGATVLVGGFG-LCGIPENLIGALLKT-----GVKELTAVSNNAGVD--NFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSSKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAA-----ETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER------------------LSVRKNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMQSENGILGLGPYPDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKVKGMGGAMDLVSSAKKVVVTMEHSAKG----------------NAHKIMEKC-TLPLTGKQCVN-----RIITEKAVFDVDRKGLTLIELWEGLT-VDDIKKSTGCDFAVSPKLIPMQQVTT--------------

Predicted Tertiary Structure


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TM-score=0.972 to 2ahuA SCOP code=c.124.1.3	TM-score=0.973 to 2ahuA SCOP code=c.124.1.3	TM-score=0.972 to 2ahuA SCOP code=c.124.1.3	TM-score=0.972 to 2ahuA SCOP code=c.124.1.3	TM-score=0.952 to 2ahuA SCOP code=c.124.1.3