Template-based Modeling Results for YDIA_ECOLI


  Submitted Primary Sequence

>Length 277
MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVENESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQEMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRMY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVENESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQEMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRMY
CCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVENESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQEMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRMY
5542220100000101120020002000120222111000111322220320121022013322230000000013301200231102011002100110032042312221332111223112201110100100020120211430330100000012113110000000221010010000132232220222122132200000011320120023224324101131022002201200342301001013310220022002102213523
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVENESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQEMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRMY
1PROSPECT21eyea0.1110.8451.150threading_1-----PVQVMGVDGGCYLDLDDAVKHGLAMAAAGAGIVDV--GGETSRVIPVVKELAA------QGITVSIDTMRADVARAALQNGVSGGRADPAMGPLLAEAHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAA------GVDPARLVLDPGLGFAKTAQHNWAILHA-------------------LPELVATGIPVLVGASRKRFLGAL--LAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVHD--VRASV-DAIKVVEAWMGAE
2HHPRED-l2iyv_A0.1510.4551.443threading_2-----------------------------------------------------------------------------------------------------------------------------------------------------APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTSIVLSLGGGVTSPGVRAAAGHTVVYLEISAAEGVR-RTGGNTVLGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVPSPS-
3HHPRED-g2iyv_A0.1940.5961.135threading_3-----AKAVLVGLPGSGKS--TIGRRLAKALG-------VGLLDTD----VAIEQ------RTGRS-----------IADIFATD-------------------------------G------EQEFRRIEVVRAALADHDG----------VLSLGGG-AVTSP--------------------------GVRAALA--GHTVVYLEISAAEGVR-RTGGNTVLAGPDREKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVPSPSE
4PROSPECT21b5ta0.0870.8741.134threading_4--GQINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDDELRTIARDY----------------WNNGIRLRGDLPPGSGKPEMYASDLVTLLKEV---------------ADFDISVAAYPEVHPELLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDIPGILSNFKQAKKFADQMFDGLDDDAETRKLVGANIAMDMVKIEGVKDFHFYTLNRAEMSYAICHTLGVRPA--
5HHPRED-l1via_A0.1440.4261.390threading_5------KN------------------------------------------------------------------------------------------------------------------------------------------------IVFIGF-GSGKSTLARALAKDLDLVFLDSDFLATGGGFVNVS--NLEKAGFCIYLKADFEYLKKRLDKDEIRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEIKKVIK------
6HHPRED-g1via_A0.1270.5671.043threading_6----KN-IVFIGF-GSGKS--TLARALAKDLDL-------VFLDSDFLIEQK----------FNQ-----------------------K-------VSEIFEQ------------KRE----NFFREQEQK-ADFFSS------------CEKACI---ATGGGF--------------------VN--VSNL-----EKAGFCIYLKADFEYLKKRLDKDEKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEIKKVIK------
7PROSPECT21q3tA0.1270.7691.126threading_7MKTI----QIAIDGPASSGKSTVAKIIAKDFGFTYLD-----------TGAMYRAATYMALKNQLGV-----EEVEALLALLDQHPISFGRSETGDQLVFV--------GDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTV------VLPQAELK---------------------------IFLVASVDRAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSYLDTTGLNIQEVVEKIKAEA---EKRM
8HHPRED-l1kag_A0.1740.4151.334threading_8--EK--R------------------------------------------------------------------------------------------------------------------------------------------------NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQVLATGGGSVKRETRNRLRGVVVYLETTIEKQLART---PLHVETPPREVLEALANERNPLYEEIADVTI-----SAKVVANQIIHMLE------
9HHPRED-g1zuh_A0.2080.5381.042threading_9-----QHLVLIGFMGSGKS--SLAQELGLALK-------LEVLDTDM----IISE------RVGLS-----------VREIFEEL-------------------------------G------EDNFRMFELIDELKTLKTP---------HVISTG----GGIVM------------------HE---------NLKGL-GTTFYLKMDFETLIKRLNQ------LNNLTQAKELFEKRQALYEKNASFIIDARG-GLNNSLKQVLQF--------
10PROSPECT21aj0_0.0700.8741.110threading_10MDLSHPHVMGILNHNSLIDAVKHANLMINAGATIIDVGGESTRPSVEEELQRVIPVVEAIAQRF-EVWISVDTSKPEVIRESAKVGAHIINDIRGALEAAAETMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQ------AGIAKEKLLLDGFGFGKNLSHNYSLLAR--------------------LAEFHHFNLPLLVGMSRKSMIGQLLN--------VGPSERLSGSLACAVIAAMQGAHIIRVHDKETVEAMRVVEATLSAKENKR

  Predicted Tertiary Structure

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TM-score=0.821 to 1eyeA
SCOP code=c.1.21.1
TM-score=0.549 to 2iyvA
SCOP code=c.37.1.2
TM-score=0.690 to 2iyvA
SCOP code=c.37.1.2
TM-score=0.768 to 1v93A
SCOP code=c.1.23.1
TM-score=0.398 to 1viaA
SCOP code=c.37.1.2