Template-based Modeling Results for YDHT_ECOLI

Submitted Primary Sequence

>Length 270
MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
CEEEHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCEEEECCCCCEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
320112213323100100100031024102002001000321113102000210142222333112121211331123213322113213222213111132212101201212211212212211201212111212312111212213111212212112211312111212313211312213111112213122123212121213212111111232122032111000022122010000021443131101010233212133
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
1	MUSTER	1aklA	0.121	0.981	1.438	threading_1	GDPTYADA-TYAEDTRAYS-VMSYWEEQNTGQDFKGAYSSAPLLDDIAAIQKLYGANLTTRTGDTVYGFNSNTERDFYSATSSSSKLVDAGGNDTLDFSGFSQNQKNEKALSDVGGLKGNVSIAAGVTVENAIGGSGSDLLIGNDVANVLKGGAGNDILYGGLGADQLWGGAGADTFVYGDIAESSAAA-PDTLRDFVSGQDKIDLSGLDAFVNGGLVLYVDAFAGKAGQAILSYDAASKAGSLAIDFSGDAH-ADFAINLITQADIVV-
2	SPARKS	2pnea	0.136	0.300	1.247	threading_2	--------------------------------------------------------------------------------------------------------------------------------------CKGADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVG--GAGGASGGTGVGGRGGKGGSGTPKGADGAPGAP-----------------------------------------------------
3	PROSPECT2	2xgfA	0.121	0.737	2.193	threading_3	APIP---------------WPSDSVPAGSAYPKLAVAY--------------------------------PSGVIPDMRGQTIKGKPSGRAVLSAEADGVKAHSHSASASSTDLGTKTTSSFDYGTKGTNSTGGHTHSGSGSTSTNGEHSHYIEAWNGTGVGGNKMSSYAISYRAGGSNTNAAGNHSHTFSFGTSSAGDHSHSVGIGAHTHTVAIGSHGHTITVNSTGNT------------------ENTVKNIAFNYIVRLA------
4	PPA-I	3boiA	0.123	0.300	1.871	threading_4	-----------------------------------------------------------------------CKGADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVG--GAGGASGGTGVGGRGGKGGSGTPKGADGAPGAP--------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	1y0f_A	0.167	0.867	3.049	threading_5	-GPAGED---GR-GPAGP-GAVMGF-AG--PGAVPAGKDEAGAQGP-GERGEQAGS-GFQ-GEAGK-GEQGV-GDLGF-GERGVEGP-GPAGPRGANGA-GNDGAKGA-GSQGA-GLQGM-GERGAAGL-GPKGDRGDAGPKGADGAPGKDGVRGLTGPSGPAGPTGARGA-GDRGE---PGPAGFAGP-GADGQ-GAKGE-GDAGAKGDAGP-GPAGPA--GP-GPIGNVGA-GARGSAGP-GAGKEGSKGPRGETPGPAGEKGA-GP-
6	HHPRED-g	1y0f_B	0.177	0.919	4.703	threading_6	QGEKGEQGPAGP-GK-GERGLHGERGAAGPTGPIGSRGPSGP-GPDGNKGEAGAVGPAGA-GPAGP-GI-GERGV-GGKGEKGA-GLRGDTGATGRDGARGL-GAIGA-GPAGGAGDRGEGGPAGPAGPAGARGIRGERGE-GPVGPSGFAGPAGAAGQ-GA-GERGTKGPVGEQGPVGPQGPVGAAGPVGAAGPAGPRGDAGPTGMTGF-GAAGRTGP-GTGP---PGAAGKEGIRGPRGDQGPTGVGEKGP-GSAGP---PGPQGLLG
7	SP3	2zvda	0.100	1.000	0.607	threading_7	APKESATDNIVSFNDHYASTAWNLLPFSILNIPTWISHLPTAYGDGMNRIIESKFYDLTSKDSTIIVANLSDPARANTWVQDLNRNAETHKGSIGSDSNDGGSGNEGRAGNDTFRDGGGYNVILGGAGNNTLDLQKSVNTFDFANDGAGNYVRDANGGISITRDIGSIVTKEPDDVTHSVTASGLKVGSNVTQYDASVKGTNGADTLKAHAGGDGLDGNDGVGNVGGAGNDLMESGGGADTFLFNGAFGVGFTSNDKLVFLGVQGDFRAH
8	SAM-T99	3hr2A	0.164	0.633	0.764	threading_8	-----------------------------------------GLAGPGESGREGSGAEGSGRDGAGAK------GDRGETGPAGPGAGAGAPGPVGPAGKNGDRGETGPAGPAGPIGPAGARGPAGPQGPRGD-GETGEQGDIGHRGFSGLQGPGSGSGEQGPSGASGPAGPRGPGSAGSGKDGLNGLGPIG--GPRGRTGDSGPAGPGPGPGPGPPSGGYD-------------------------------------------------
9	MUSTER	2z8zA	0.106	0.981	1.369	threading_9	IVSFNDHYASTAWNLLPFS--ILNIPTWISYGDGMNRIIESKFYDLTSK---DSTIIVANLSDPARANTWVQDLNRNAETHKGSTFIIGSDSNDLIQGGSGNDYLEGRAGNDTFRDGGGYNVILGGAGNNTLDLQKSVNTFDFANDGAGNLYVRDANGGICITRDIGSIVTKEPGFLWGLFKDDGSNVTQYDASVKGTNGADTLKAHALDGNDHLIGGVGNDVFVGGAGNDLMESGGGADTFLFNGAFGQDGFTSNDKLVFLGVQGVLPN
10	SPARKS	3boga	0.150	0.296	1.184	threading_10	--------------------------------------------------------------------------------------------------------------------------CKGADGAHGV-GCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAG--GVGGAGGASGGTGVGGRGGKGGSGTPKGADGAPGAP-----------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.781 to 1srpA SCOP code=b.80.7.1	TM-score=0.854 to 1go7P SCOP code=b.80.7.1	TM-score=0.310 to 1phoA SCOP code=f.4.3.1	TM-score=0.293 to 2eduA SCOP code=a.60.2.7	TM-score=0.292 to 1je3A SCOP code=d.68.3.3