Template-based Modeling Results for YDHO_ECOLI

Submitted Primary Sequence

>Length 271
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR
CHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHCCCCCEEEEECCCCCCCCEEEEEECCCEEEECCCCCCCEEEEECCCHHHHHHHEEEEEECCHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR
4430011000000000000100210212332432222231233134332222133123213312232113221121222111112322323222112220112013312433223231232332222221323424133102100220032112101111212321100000000002311414012012101223321303322033000000102141200000000020100001421320100101231013100001111234225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR
1	MUSTER	2k1gA	0.341	0.476	2.127	threading_1	---------------------------------------------------------------------------------------------------------------------------------------MNVDVKSRIMDQYADWKGVRYRLGGSTKK-GIDCSGFVQRTFREQFGLELPRSTYEQQEM--GKSVSRSNLRTGDLVLFRAGSTG--RHVGIYIGNNQFVHASTSS-GVIISSMNEPYWKKRYNEARRVLSRS-LE
2	SPARKS	2jyxa	0.349	0.476	3.150	threading_2	---------------------------------------------------------------------------------------------------------------------------------------MNVDVKSRIMDQYADWKGVRYRLGGSTKK-GIDCSGFVQRTFREQFGLELPRSTYEQQEM--GKSVSRSNLRTGDLVLFRAGSTG--RHVGIYIGNNQFVHAS-TSSGVIISSMNEPYWKKRYNEARRVLS-RSLE
3	PROSPECT2	3pbiA	0.235	0.690	3.004	threading_3	GQ------------------WDPTLPALVSAGAPGDPLAVANASLQATAQATQTTLDLGRQFLGG-----------------------------------------------------LGINLGGPTGASRIPRANARQAVEYVIRRAGSQMGVPYSWGGGSLQGPFDCSGLVRYAFA-GVGVLIPRFSGDQY--NAGRHVPPAEAKRGDLIFY---GPGGGQHVTLYLGNGQMLEASGSAGKVTVSPVRKAGM---TPFVTRIIE----Y
4	PPA-I	2k1gA	0.333	0.476	2.143	threading_4	---------------------------------------------------------------------------------------------------------------------------------------MNVDVKSRIMDQYADWKGVRYRLGGSTK-KGIDCSGFVQRTFREQFGLELPRSTYEQQE--MGKSVSRSNLRTGDLVLFRAGSTG--RHVGIYIGNNQFVHASTSS-GVIISSMNEPYWKKRYNEARRVLSRSLE-
5	HHPRED-l	2hbw_A	0.245	0.753	4.719	threading_5	----------------------------GEYQCLAALN-LYD-SP-ECTSLATQAA-------VGRHLQVTS----NQQG-------AA--VE---VCLCEDDYPGWLSLGD-LGL--LKPA-TVLYQAKSFSESEIKKLLAIAFTQKA-QQSNYYLWGGTVG-PNYDCSGL-QAAFVS-VGIWLPRDAYQQEAFTQ--AITIDELAPGDLVFFGTP--VKATHVGLYLGDGCYIHSSGKADGIGIDILSEQSYYQQLRGAGRVVKSYKP-
6	HHPRED-g	2hbw_A	0.257	0.745	4.277	threading_6	------------------------------------------------------------GEYQCLAALNLYDSPECTS-LATQAAVGRHLQVTSNQGAAVEVCLCEDDYPGWLSLGDLGLLKPATLYAKSFSESEIKKLLAIAFTQKA-QQSNYYLWGGTVG-PNYDCSGL-QAAFVS-VGIWLPRDAYQQEAF--TQAITIDELAPGDLVFFGTPV--KATHVGLYLGDGCYIHSSGKAQGIGIDILSEQSYYQQLRGAGRVVKSKPQR
7	SP3	2k1ga	0.333	0.476	2.804	threading_7	---------------------------------------------------------------------------------------------------------------------------------------MNVDVKSRIMDQYADWKGVRYRLGGSTKK-GIDCSGFVQRTFREQFGLELPRSTYEQQEM--GKSVSRSNLRTGDLVLFRAGST--GRHVGIYIGNNQFVHASTSSG-VIISSMNEPYWKKRYNEARRVLS-RSLE
8	SAM-T99	2k1gA	0.367	0.443	5.494	threading_8	-------------------------------------------------------------------------------------------------------------------------------------------VKSRIMDQYADWKGVRYRLGGSTK-KGIDCSGFVQRTFREQFGLELPRSTYEQQEM--GKSVSRSNLRTGDLVLFRAGSTGR--HVGIYIGNNQFVHA-STSSGVIISSMNEPYWKKRYNEARRVL------
9	MUSTER	2hbwA	0.256	0.734	2.010	threading_9	----------------------------------------------------------------GEYQCLAA-DSPECTSLATQAAVGRHLQVTSNQQGAAVEVCLCEDDYPSLGDLGLLKPATVLYQAKSFSESEIKKLLPGAIAFTQKAQSNYYLWGGTVGP-NYDCSGL-QAAFVSV-GIWLPRDAYQQEAF--TQAITIDELAPGDLVFFGTPVK--ATHVGLYLGDGCYIHSSGKAQGIGIDILSERSYYQQLRGAGRVVSYKPQR
10	SPARKS	2k1ga	0.349	0.476	3.139	threading_10	---------------------------------------------------------------------------------------------------------------------------------------MNVDVKSRIMDQYADWKGVRYRLGGSTKK-GIDCSGFVQRTFREQFGLELPRSTYEQQEM--GKSVSRSNLRTGDLVLFRAGSTG--RHVGIYIGNNQFVHAS-TSSGVIISSMNEPYWKKRYNEARRVLS-RSLE

Predicted Tertiary Structure


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TM-score=0.424 to 2iobB SCOP code=c.30.1.7	TM-score=0.435 to 2d0nA SCOP code=b.34.2.1	TM-score=0.426 to 2iobB SCOP code=c.30.1.7	TM-score=0.413 to 2im9A SCOP code=d.3.1.13	TM-score=0.424 to 2iobB SCOP code=c.30.1.7