Template-based Modeling Results for YDHK_ECOLI

Submitted Primary Sequence

>Length 670
MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAYAFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALLTALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNARLNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPLRPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAMWSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLSLFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTNPPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTLSESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRDNCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLEQAPPQGTLAS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAYAFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALLTALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNARLNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPLRPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAMWSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLSLFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTNPPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTLSESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRDNCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLEQAPPQGTLAS
CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAYAFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALLTALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNARLNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPLRPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAMWSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLSLFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTNPPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTLSESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRDNCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLEQAPPQGTLAS
5522110132021031111100000100000000000000020320100000000001121110012000100000000000000001022211000000000000000000111111000000000000000001111221230010001000100000000000010001211121012002200220120011013332232122102100020020111112012222312211210010021002001001101300231222212122001200211221322121002002212223212121100121021002101200210230211133323222220122111001000000100000000000000021220000000000000010012121300020010000000000001000010011000000000000000100212112000100000000000000211110000100000002000000000000001112321102100210021002102332221222010100100010021332223210120000001002001201212321321220120022002001233222332121012102200210232332222200200110000013033123313224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAYAFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALLTALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNARLNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPLRPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAMWSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLSLFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTNPPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTLSESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRDNCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLEQAPPQGTLAS
1	MUSTER	3m1iC	0.101	0.972	1.374	threading_1	IGIRNFVVGMIISMDDEVFKTQKNLINKSDLTLVQILKQEWPQN---WPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYET-NILELLSTKFMTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADGNDQSFLQDLAMFLTTYLARNRALLESDENAHQYLIQLSKIRELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVGEIVREFVKESDTIQLYKSEREVLVYLTHLVIDTEEIMISKLARQIDGSEWSWHNINTL---WAIGSISTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETH---EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP---QQVHTFYKACGIIISEERSVAERNRL----LSDLMQLPNMAWDTIVEQSTANPTLLLTVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD-AEVLNCMTTVVEKVGHMIPQG-VIL
2	SPARKS	2vg8a	0.113	0.658	1.049	threading_2	-------------------------------------------------------------------------------------------------------------------------------TPHVAIIPS-----PGMGHLIPLVEFAKRLVGLTVTFVIAGEGPPSAQRTVLDSLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILLEPNAIKALQEPGLDKPPVYPVGPLVNIGKQESECLKWLD---------------NQPLGSV------LYVSFGSGGTLTCEQLNELALGLADS----------------EQRFLW-------------VIRSPSGIA----------NSSYFDSHSQTDPLTFLPGFLERTKKRGFVIPQAQVLAHPSTGGF---LTHCGWNSTLESVVSGIP----------------LIAWPLYAEQKMNAVLLSEDIRAALRP-----RAGDDGLVR--REEVARVVKGLME--GEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKAHKKELEQ---------
3	PROSPECT2	1qgra	0.086	0.988	2.918	threading_3	MELITILEKTV---SPDRLFLERAAVENLPTFLVELSRVLANPGNSVAAGLQIKNSLTSKDPDIKAQYQQRWASQCVAGIACAEIPVNQWPELIPQLVANVMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFFIMQVVCEATQCPDTRVAALQNLVKIMSLYYQYMETYMGKSDIDEVALQGIEFWSNVCDEEMDLAIEASDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIPEAAINDVYLAPLLQCLIEGPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQIQSTSDRIQFNDLQSLLCATLQNVLRHQDALQISDVVMASLVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQGDLCRALQSNIIPFCDEVMQLL-LENLGNENVHRSVKPQILSVFGDIALAIGGE----FKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTVQGLKGDQENVHPDVMLVQPRVESFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKKNQA
4	PPA-I	3ea5B	0.097	0.949	1.054	threading_4	NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCLEPVL--EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN------DQSLQVKETTAWCIGRIADSVHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG-----------KGFEKYLETFSPYLLKALNQ--VDSPVSITAVGFIADISNSLEEDRRYSDAMMNVLAQMISELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGILHDKPEALFPYVGTIFQFIAQVAEDPQLYSE----DATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQLSL---------
5	HHPRED-l	3iyz_A	0.085	0.281	0.918	threading_5	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WTQAFW--------KAVTAEFLAMLIFVLLSVGSTINWGGS-----NPLPVDM---VLISLCFGLSIA--TMVQCF-GHISG--GHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSTAGGLLVELIITFQLVFTIFASCDDGSVALAIGFSVAIGHLFAIYTGASMNPARSFGPAVGPIIGAVLAGALYEYVFC--------------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	1j4n_A	0.129	0.312	0.918	threading_6	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MASEFKKKLFWRAVAEFLAMILFIFIIGSAL----GFHYPIKSNQTTGAVQDNVKVSLFGLS--IATLAQS-VGHI------SGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPGLEIIGTLQL-VLCVLATTDRRRGGSGPLAIGFSVALGHLLAIDTGCGINPARSFGSWVGPFIGAALAVLIYDFILAPRSSDLTDRVVWTS------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	2yl4a	0.151	0.749	1.195	threading_7	---------------------------------------------GLPEARKLLGLAYPE--------RRRLAAAVGFLTMSSVISMS-----APFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIR----VYLMQTSGQRIVNRLRTSLFSSILR--QEVAFFDKTRTGELINRLSSDTALLGRSVT--------ENLSDGLRAGAQASVGISMMFFVS-------PNLATFVLSVVPPVSIIAVIYGRYLR------KLTKVTQDSLAQA------TQLAEERIGN--------VRTVRAFGKEMTEIEKYASKVDHVMQLA--------------------RKEAFARAGFFGATGLSGNLIVLSVLY-KGGLLMGSAHMT--------------VGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRL---WELLE-REPKLPFNEGVILVHFAYPARPEVPIFQDFSLSIPSVTA-LVGTVLSLLTISLIRQLN--------PVWLRSKIG-TVSQEPIL----FSCSIAENIAYGADDPSSVTAEEIQRVAEVA-NAVAFIRNFPQGFEKGVLLSGGQKQRIAIARALLK----NPKILAENEYLVQEALDRLMDGR-------TVLVHR----LSTIKNALDQGKIGK
8	SAM-T99	2xzmO	0.108	0.194	0.481	threading_8	--LPFKRRSPKWLHMTPSTVVDLSVKLA----------------------------------------------------------------------------------------------------------------KKG--------------------------LTPSQIGVILRDQ-----------------------------------------------------------------------------------HGIPQVRFLTGQKILRILKQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQKLPPKWKYNAQTASALVQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	1qgkA	0.097	0.982	1.304	threading_9	PDIKAQYQQRWLAIDAARREVKNYVLHSASQCVAGIACAEIPVQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIKSNEILTAIEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI--DEVALQGIEFWSNVCDEEMDLAIEASEAAEQKFYAKGALQYLVPILTQTLTKQ-DWNPCKAAGVCLMLLATCCDDIVPHVLPFIKEHIKNPDEPSQLKPLVIQAMPTLIELMKDAWTVGRICELLPEAAILAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR------DGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHI-TSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTSGGVQEDALMAVSTLVEVLGMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLG--VHRSVKPQILSVFGDIALAIYLEVVLNTLQQASQAQVDLNELRESCLEAYTGIVQNVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEAR
10	SPARKS	2vcha	0.109	0.655	0.933	threading_10	-------------------------------------------------------------------------------------------------------------------------------TPHVAIIPS-----PGMGHLIPLVEFAKRLVGLTV-TFVIAGEGPPSAQRTVLDLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILLEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEA--------------SECLKWLDNQPLGSV------LYVSFGSGGTLTCEQLNELALGLAD-SEQRFLWV----------------------------IRSPSGIAN------------SSYFDSQTDPLTFLPPGFLRTKKRGFVIPQAQVLAHPSTGGF---LTHCGWNSTLESVVSGIP----------------LIAWPLYAEQKMNAVLLSEDIRAALRP-----RAGDDGLVR--REEVARVVKGLME--GEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKAHKKELEQ---------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.577 to 1qbkB SCOP code=a.118.1.1	TM-score=0.565 to 1b3uA SCOP code=a.118.1.2	TM-score=0.786 to 2vg8A SCOP code=c.87.1.10	TM-score=0.780 to 1qgkA SCOP code=a.118.1.1	TM-score=0.796 to 3ea5B SCOP code=a.118.1.1