Template-based Modeling Results for YDHJ_ECOLI

Submitted Primary Sequence

>Length 285
MSIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCEECCCCEEEEEEECCCEEEEEEECHHHHHHCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCEECCCCEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ
453301310000000000000001001111313213201020110200031101001010322220231100010132211111210211012021112201211212231233211132122012103102110210111022012212202010212010010102211102222000000102201010102111032033112020101033220201010003112232231321102323122210210110001000242333120010110202135
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ
1	MUSTER	3lnnA	0.232	0.863	1.806	threading_1	VPESPLRRTLAVAPATRETV-----------AAPFN-AMIEADLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD----LAQANSDAAKARAAMTMARRNLDRQRELDSEIAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGILAVRSPINGRVVDLNAATGAYWNDTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDDPQPGKVRYVGQIL-DADTRT--------------------TKVRMVFDN--PDGRLRPGMFAQATFLS
2	SPARKS	3fppa	0.231	0.821	3.978	threading_2	------------------------------PGDLQQTGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMQAEAELKLARVTYSRQQRLQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGQLTRYEGQIKDVLPTP-EKVNDAIF------------------YYARFEVPN--PNGLLRLDMTAQVHIQL
3	PROSPECT2	1t5eA	0.215	0.751	3.775	threading_3	TELP---------------------------------GRTNARIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVAD------QAVSKQQYAD-------ANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQAMATVQQLDPIYVDVTQPSTALLRLRRDNAAKVSLKLEDGPLEGRLEFSE---------------VSVDEG------TGSVTIRAVFPNPNNE--LLPGMFVHAQL--
4	PPA-I	3fppB	0.209	0.825	3.365	threading_4	-----------------------------RPGDLQQSKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTAVSATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGQLTRYEGQIKDVLPTPEKVNDA---------------------IFYYARFEVPNPNGLLRLDMTAQVHIQL
5	HHPRED-l	3fpp_A	0.232	0.832	4.349	threading_5	--------------------------PGDLQQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQARVTYSRQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDLTRYEGQIKDVLPTPEKVNDAI-------------------FYYARFEVPNPN--GLLRLDMTAQVHIQ-
6	HHPRED-g	2f1m_A	0.262	0.751	4.323	threading_6	---------------------------------TTEPGRTSAYIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQALATVQQLDPIYVDVTQSSND-----------VSLITSDFPQDGTLEFSDVTV---------------DQT------TGSITLRAIFPN-P-DHT--PG-FVRARLE-
7	SP3	3fppa	0.233	0.828	3.676	threading_7	----------------------------PGDLQQSVLGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMEAEAELKLARVTYSRQQRLQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGQLTRYEGQIKDVL---------------PTPEKVNDAIFY----YARFEVP--NPNGLLRLDMTAQVHIQL
8	SAM-T99	2f1mC	0.276	0.635	3.699	threading_8	------------------------------------------RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQA------------------TALATVQQLDPIYVDVTSSNDRLK---QELANGTLKQENGK-----------------------------------------AKVSLIT
9	MUSTER	3fppB	0.227	0.818	1.747	threading_9	-----------------------------RPGDLQQ-GKLDALRKVD-AQVSGQLKTLSVAIGDKVKKDQLLGVIDPKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTAVSATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGQLTRYEGQIKDVLPTP-EKVNDA------------------IFYYARFEVPN--PNGLLRLDMTAQVHIQL
10	SPARKS	3lnna	0.244	0.821	3.012	threading_10	ATRETVAAPFNLP------------------------AMIEADLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD----LAQANSDAAKARAAMTMARRNLDRQRELKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGILAVRSPINGRVVDLNAATGAYWNDTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDDPQPGKVRYVGQIL-DADTRT--------------------TKVRMVFDN--PDGRLRPGMFAQATFLS

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.508 to 1iyuA SCOP code=b.84.1.1	TM-score=0.473 to 1lrzA SCOP code=a.2.7.4	TM-score=0.514 to 1iyuA SCOP code=b.84.1.1	TM-score=0.481 to 1qjoA SCOP code=b.84.1.1	TM-score=0.435 to 1o78A SCOP code=b.84.1.1