Template-based Modeling Results for YDHF_ECOLI

Submitted Primary Sequence

>Length 298
MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRKAALGYDVP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRKAALGYDVP
CCCEEECCCCCCEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRKAALGYDVP
5211021233102000000001201412121310020022003100100000201013300100020042133222201000000021223333221221022210130013002203120000000021122020220030033024213010000020112101001220312000100100112121111100200232501000000001020143321320131012004414110110000000032321000011013132022004112030143101202311222414
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRKAALGYDVP
1	MUSTER	1ur3M	0.962	0.973	3.489	threading_1	LVQRITIAPQGPEFSRF-VGYWRLDW--NSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRE-REIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDP-LDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRV-RPAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKT-RQQWFRIRKAALGYDV-
2	SPARKS	1og6a	0.993	0.997	5.077	threading_2	LVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRKAALGYDV-
3	PROSPECT2	1og6a	0.993	0.997	4.562	threading_3	LVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRKAALGYDV-
4	PPA-I	1ur3M	0.928	0.973	5.890	threading_4	LVQRITIAPQGPEFSRF-VGYWRLDW--NSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRE-REIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDP-LDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRV-RPAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKTRQQWFRIRKAAL-GYDV-
5	HHPRED-l	1ur3_M	0.993	0.973	3.148	threading_5	LVQRITIAPQGPEFSRFV-GYWRL-DWN-SARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRER-EIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPL-DADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRP-AWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAETLK-TRQQWFRIRKAALGYDV-
6	HHPRED-g	1ur3_M	0.993	0.973	2.590	threading_6	LVQRITIAPQGPEFSRFV-GYWRL-DWN-SARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRER-EIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPL-DADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRP-AWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAETLK-TRQQWFRIRKAALGYDV-
7	SP3	1og6a	0.993	0.997	4.971	threading_7	LVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRKAALGYDV-
8	SAM-T99	1ur3M	0.983	0.973	3.024	threading_8	LVQRITIAPQGPEFSRFV-GYWRLDW--NSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRER-EIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPL-DADEVADAFKHLHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRP-AWSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAETLK-TRQQWFRIRKAALGYDV-
9	MUSTER	1ynpB	0.204	0.956	3.052	threading_9	HMKKRQLGTSDLHVSELGFGCMSLGT---DETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALK---GRRQDIILATKVGNRFEQGKEG--WWWDPSKAYIKEAVKDSLRRLQTDYIDLYQLHGGTIDDPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSN--IVSIMMQYSILDRRPE--EWFPLIQEHGVSVVVRGPVARGLLSRRLNYRYDELKLLRESLPTDR-PLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEAPLTAEERQHIQKLAKAAVYE
10	SPARKS	3erpa	0.241	0.973	4.759	threading_10	TMEYRRCGRSGVKLPAISLGLWHNFGDTTRVENSRALLQRAFDLGITHFDLANNYGPGSAECNFGRILQEDFPWRDELIISTKAGYTMWDGPYGD----WGSRKYLIASLDQSLKRMGLEYVDIFYHHRPDPETPLKETMKALDHLVRHGKALYVGISNYPADLARQAIDILGTPCLIHQPKYSLFERWVE-DGLLALLQEKGVGSIAFSPLAGGQLTDTADKLEKVRRLNELAARRGQ-KLSQMALAWVLRNDNVTSVLIGASKPSQIEDAVGMLNRRFSAAECAEIDAILEGRF--

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.982 to 1ur3M TM-score=0.968 to native SCOP code=c.1.7.1	TM-score=0.982 to 1ur3M TM-score=0.963 to native SCOP code=c.1.7.1	TM-score=0.964 to 1ur3M TM-score=0.997 to native SCOP code=c.1.7.1	TM-score=0.964 to 1ur3M TM-score=0.997 to native SCOP code=c.1.7.1	TM-score=0.983 to 1ur3M TM-score=0.968 to native SCOP code=c.1.7.1

Experimental Structure

Download 1og6C

SCOP code=c.1.7.1