Template-based Modeling Results for YDGD_ECOLI

Submitted Primary Sequence

>Length 273
MRTTIAVVLGAISLTSAFVFADKPDVARSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRTTIAVVLGAISLTSAFVFADKPDVARSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEECCCCCCCCCEEEEEEEECCCCEEEEEEEECCEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCEEEECCCCCEEEEECCCCCCCCCCCEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRTTIAVVLGAISLTSAFVFADKPDVARSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK
421110000000000000011232312422333122001032221202322301110000011231100000000210000000001133412112000010012322232211102021223212202010311212221121000000022112222100113123222222132211200000123232311101220100022221000000100311110000021240000000000112043222031100001002220221255
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRTTIAVVLGAISLTSAFVFADKPDVARSANDEVSTLFFGHDDRVPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRFVSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITPLPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDTLPGDSGSPLMLHTDDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK
1	MUSTER	2olgA	0.194	0.908	2.025	threading_1	-------------------RNRRPELLPNYQVEADKILNGDD-----TVPEEFPWTAMIGYKNSSNFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFIRPVCLPQPEEVQVGQRLTVVGWGRTETGQYSTIKQKVVHAEQCAKTFGAAGVRVSQLCDSCGGDSGGPLLAERNQQFFLEGLVSFGATCG-TEGWPGIYTKVGKYRDWIEGNIRP
2	SPARKS	1h8d\.1	0.198	0.908	2.966	threading_2	-------------LRPLFEKKSLEDKTERELLESYIIVEGSD-----AEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRY----ERNIEKISMLEKIYIHPRYNWR-ENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQVERPVCKDS-TRIRITDNMFCDACEGDSGGPFVMKSNNRWYQMGIVSWGEGCDRDGKY-GFYTHVFRLKKWIQKVIDQ
3	PROSPECT2	3cp7A	0.180	0.751	2.048	threading_3	-------------------------------------------------PADSPHIGKVFFSTNQGDVCSANIVNQSTVATAGHCLHDGNGGQFARNFVFAPAYDYGESEHGVWAAEELVTSAE-----------WANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQP---RGQYYSAYGYPAAAPFNGQELHSCHGTDPMGSSTQGIPCNMTGGSSGGPWFLGNGTGGAQNSTNSYGYTFLPN-----VMFGPSGAQQNYNYASTT
4	PPA-I	2olgA	0.165	0.908	2.065	threading_4	----------------RNRRPELLPNDCGYQVEADKILNGDD-----TVPEEFPWTAMIGYKNSSNFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQP---NEEVQVGQRLTVVGWGRTETGQYVHAEQCAKTFGAAGVRVRQLCDSCGGDSGGPLLAERNQQFFLEGLVSFGATCGTEGWP-GIYTKVGKYRDWIEGNIRP
5	HHPRED-l	2f83_A	0.155	0.853	1.827	threading_5	LDAAKSHEACKLCTNAKLSSNGSPTKNECTTKIKPRIVGGTA-----SVRGEWPWQVTLHTTSPQRHLCGGSIIGNQWILTAAHCFYGVESPKIL---RVYSGI-LNQSEIKEDTSFFGVQEIIIHDQYKM--------AESGYDIALLKLETTVDSQRPICLPSKGRNVIYTDCWVTGWG------KQKAKIPLVTNEECQTHKMICA----------KGDSGGPLSCKHNEVWHLVGITSWGEG----ER-PGVYTNVVEYVDWILEKT--
6	HHPRED-g	1z8g_A	0.179	0.901	1.717	threading_6	RLPHTEVISVCDCPRGRFLAAICQDCGRR-KLP---IVGGRD-----TSLGRWPWQVSLR--YDGAHLCGGSLLSGDWVLTAAHCFPERNRLSRWRVFAG------------AVAQASPHGLQLGVQAVVYHGFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAA---GQALVDGKICTVTGWGNTQYYGIISNDVCNGADMFCAGYPEGGIDACQGDSGGPFVCEDTPRWRLCGIVSWGTGCALAQKP-GVYTKVSDFREWIFQAIKT
7	SP3	1h8d\.1	0.198	0.908	2.844	threading_7	LRP-------------LFEKKSLEDKTERELLESYIIVEGSD-----AEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRY----ERNIEKISMLEKIYIHPRYNWR-ENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQVERPVCKDS-TRIRITDNMFCDACEGDSGGPFVMKSNNRWYQMGIVSWGEGCDRDGKY-GFYTHVFRLKKWIQKVIDQ
8	SAM-T99	1jwtA	0.179	0.923	1.860	threading_8	-TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSD----AEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERLEKIYIHPRYNWR------------ENLDRDIALMKLKKPVASDYIHPVCLPDRETAASL-LQAGYKGRVTGWGNLKETWIVERPVCKDSTRITDNMFCAGGDACEGDSGGPFVMKFNNRWYQMGIVSWGE---GCDRDYGFYTHVFRLKKWIQKVIDQ
9	MUSTER	2anyA	0.193	0.799	1.999	threading_9	------------------------------------IVGG-----TESSWGEWPWQVSLQVKLAQRHLCGGSLIGHQWVLTAAHCFDGLPLQD---VWRIYSGILELSDITK---------DTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYQKPISLPSKGDTSIYTNCWVTGWGFSKEKGEIQNI-PLVTNEECQKRYMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCA-RREQPGVYTKVAEYMDWILEKTQS
10	SPARKS	1xx9a	0.194	0.791	2.918	threading_10	------------------------------------IVGGTA-----SVRGEWPWQVTLHTTSPTQHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRVYSGILNQSEIKED-----TSFFGVQEIIIHDQ--YKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDR---NVIYTDCWVTGWGYRKLRDKVTNEECQKRYRGHKITHKMICDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERP-GVYTNVVEYVDWILEKTQA

Predicted Tertiary Structure


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TM-score=0.740 to 1pytD SCOP code=b.47.1.2	TM-score=0.847 to 1bmlA SCOP code=b.47.1.2	TM-score=0.817 to 1jwtA SCOP code=b.47.1.2	TM-score=0.740 to 1p3eA SCOP code=b.47.1.1	TM-score=0.713 to 1pytD SCOP code=b.47.1.2