Template-based Modeling Results for YDGA_ECOLI

Submitted Primary Sequence

>Length 502
MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLAQEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLAQEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCEEHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEECCEEECCCCCEEEEECEEEEEEEECCCCEEEEEEEECCEEEECCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEECCEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEEEECCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLAQEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ
5521110100000000011001110022012102200220122032213423020101213310000200000212214333213322201011101100000120331310000000101022231023002213332102010200111201020102201133432200021020201023313102010202202021233334312020210202021221322231021201011010113344201020010202010243232010201010130202333122010002013010300220031022103011123322322311122012001200210043312010130102134130201000104322224322210122022013101020102131012002101323223332032103210210020022131012223202010101222010123302031000001011122222322345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLAQEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ
1	PROSPECT2	2x9wA	0.090	0.755	1.528	threading_1	EAKPKIDKDF----------------------------------KGKANPDTPRVDKDTPVNHQVGDVVEYEIVTKIPALANYATANWSDRTEGLAFNKGTVKVTVDDVALEAGDYALTEVLKLTDAGLAKVNDQNAEKTVKITYSATLNDKAIVTFNYPKPNKPNENGDLTLTEATFDLVNAQAGKVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSIKGYSADYQEITTAGEIAVKNWKDENPKPLDPTEPKVVTYGKKFVKVNDKDNRLAG------AEFVIANADNAGQYLARKADKVSQEEKQLVKDALDRAVAAYNALTAQQQTQQEKEKVDKAQAAYNAAVIAANNAFEWVADFEITGLAGTYYLEETKQPAGYALLTSR-------------------------------------------------------------------------QKFEVTATSYSATGQGIE----------YTAGSGKDDNKKIT
2	PROSPECT2	1qfma	0.064	0.930	1.526	threading_2	MLSFQYSEQTKAFVEAQNKITVPFLEQPIRGLYKERMTELYDYPNILSDDGTVALRGYAFGSDWVTIKFELPDVLERVKFSMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHV---LGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS--IREGDPVNRLWYCILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLIN--IDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASD--------------------YQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPQNCFDDFQCAAEYLIKEGYTSPKRLTIGHAWTTDYGSDSKQHFEWLIKLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAG---HGAGKPTAKVIEEVSDMCLNIDWIP-----
3	PROSPECT2	1bhga	0.071	0.932	1.525	threading_3	GLQ----------------GGMLYRRRGFEEQWYRRPLWESDWRLRHFVGWVWYEREVILPERWTDLRTRVVLRIGSAHSYAIVWVNGVDTLEHEGGYLPADISNLVQVGPLPSRLRITIAINNT--------LTPTTLPPGTIQYLTDTSKYPKGYFVQNTYFDFFNYAGLQRSVLLYTTPTTYIDDITVTTSVEQVNYQISVKGSNLFKLEVRKVVANGTGTQGQLKVPAYLYSLEV-QLTAQTSLGPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRDECPGVGLALPQFFNNVSLHHHMQVMEEVVRRDKNPASHLESAGYYLKMVIAHTKSLDPSRPVTFVSNSNYAADKGYVDVICLNSYYSWYHDYGHLELIQLQLATQFENWYKKYQKPIIQSEYGAETIAGFHQDPPLMFEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQFTRQRQPKSAAFLLRERYWK---------IANE
4	PROSPECT2	1ykdA	0.055	0.685	1.502	threading_4	VTEVEQKLQIVHQTLSMLDSHG------FENILQEMLQSITLKTGELLGADRTTIFLLDEEKQEL------WSIVAAGEGDRSLEI--------RIPADKGIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQ--------------------------------------LLNKLKPYSPPDA----------------------------------------------------------------------LLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQRAAAAMMKAVKSLSLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGS--------------------TKELRVPIGKGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLFNGDQELIGVTQLVNKKKTGEFPPYNPET----------WPIAPECFQAS
5	PROSPECT2	2xtlA	0.100	0.757	1.493	threading_5	ETKPQVDK---------------------------NFADKELDYANNKKDKG----TVSASVGD-VKKYHVGTKILKGSDYKKMTKGLTFNNDIAVTLDGATLDA-TNYKLVADDQGFRLVLTDKGLEAVAKAAKTKDVEIKITYSATLNGDVKLDYGNNPTIENEPKEGIPVDKITVNKTWAVDGNEVNKADETVDAVFTLQVKDGDKWVNVDSAKATAATSFKHTFENLDNAKTYRVIEYVSFVNGVVTIKNNKDSNEPTPINPSEPKVVTYGRKFVKTNKDGKERLAGATKYLARKSGVATDAEKAAVDSTKSALDAAVKAYNDLTKEKSALATVSEKQKAYNDAFVKANYSYEW----VEDKNAKNVVKLISN-----------------------------------------------------------------------------DKGQFEIQYSLEDVSFNVNATSYS--------KGSAQDIEYTQGSKTK
6	MUSTER	2x9wA	0.113	0.793	0.764	threading_6	-----------------------------------------------------------------EAKPKIDKDFKGKANPDTPRVDKDTPVNHQV--G-------------VVEYEIVTKIPALANYATANDRTEGLAFNKGTVKVTVDDVALEAGDYA-LTEVATGFDLKLTDAGLA-KVNDQNAEKTVKITY-SATLNDKAIVEVPESNDVT-FNYGNNPDHGNTPKPNKNGDLTLTKTWVDATGAPI--PAGAEATFDLVNAQAGKVVQTVTLTTKNTVTVNGLD-KNTEYKFVERSIKGYSAD-YQEITTAGEIAVKNWKDENPKPLDPTEPKVVTYGKKFVKVNDKDNRLAGAEFVIANADNA---GQYLARKADKVSQEEKQLVVTTKDALDRAVAAYNALT-------------AQQQTQQEKEKVDKAQAAYNAAVIAANNAFEWVADKNVVKLVSAQGRFEITGSRQKFEVTATSYSATGQGIEYTAGSGKD
7	SPARKS	2w5fa	0.066	0.785	0.956	threading_7	-----------------------------------------------------------------ADYEVVHDTFEVNFDGCNLGVDTYLTAVENEGNG------------TRGMMVINRSSASDGAYSEKGFYLDGGVEYKYSVFVKHNGTGTETFKLSVSYLDSETEEENKEVIATKDVVAGEWTEISAKYKAPKVNITLSITTDSTVDFIFDDVTITRKAANAVLKDMYANYF----RVGSVLNSGTV-----NNSSIKALILREFNSITCENEMKPDAT-LVQSGSTNTNIRVSLNR--AASILNFCAQNQWFFKDNFQDNGNWVSQSVMDQRLESYIKNMFAEIQRQYPSLNLY--AYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKF-----IEKAFTYARKYAPANNEYWDHKRDCIASICANLYNKGLL--------DGVGMQSHINAD----MNGFSGIQNYKAALQYINIGCDSTENGKFS
8	PROSPECT2	1foha	0.076	0.920	1.489	threading_8	TKYSPAGLMAARVLSEYVNGQADGLQCRTLESLKNL--GLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQSDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYNSLFHSNLQTQEEEDANYRLVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQFTPEVVIANAKKIFHPYTFDVQQLDWF-------------TAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMGRAKRDILKTYEEERHAFAQALIDAKDVADEMGVSMDVFKEAFVKGNEFASGTAINYDENLVTDKKSSKQELAK---NCVVGTRFKSQ-----------------PVVRHSEGLWMHFGDRLVTDGRTDATQMSRIKKFSAYLDVISLYTPKVSDRNSRIDVITIHSCH-----RDDIEMHDFPAPALHPKSGAQTEADWTKS
9	PPA-I	2x9wA	0.089	0.809	0.895	threading_9	-----------------------------------------------------------------EAKPKIDKDFKGKANPDTPRVDKDTPVNHQV------------GDVVEYEIVTKIPALANYATANWSDRTEGLAFNKGTVKVTVDD---VALEAGDYALTEVATGFDLKLTDAGLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYGNNPDHGNTPKPNKPNENGDLTLTKTWVDATGAPIPAGAEATFDLVNAQAGKVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSIKGYSADYQEITTAGEIAVKNWKDENPKPLDPT----------------EPKVVTYGKKFVKVNDKDNRLAGAEFVIANADNAGQYLARKADKVSQEEKQLVVTTKDALDRAVAAYNALTAQQQTQQEKEKVDKAQAAYNAAVIAANNAFEWVADKDVVKLVSDAQGRFEITGYALLTSRQKFEVTATSYSATGQGIEYTA
10	HHPRED-l	3gku_A	0.137	0.365	0.756	threading_10	---------------------VTVTAKTVEEAVTKALIELQ------TTSDKLTYEIVEKSAGF--KPAIIRAKRKET-----------------------LQDKA------------------IEFLEQVFDA-----AVDI--SVE---------------YNETEK------------------E-N---------------------VNLK-----GD----D-GILIGKRGQTLDSLQYLVSDYIRVKLDTENY----------------------------------------RERRKETLETLAKNIAYKVKRTKRSVSLEP-NPY-ERRI-------IHAALQNDKYVVT------RSDGEEPFRVIISLKR--------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.467 to 1f13A SCOP code=b.1.18.9	TM-score=0.407 to 1f13A SCOP code=b.1.18.9	TM-score=0.890 to 1w5dA SCOP code=e.3.1.3	TM-score=0.646 to 1h2xA SCOP code=b.69.7.1	TM-score=0.460 to 1cwvA SCOP code=b.1.14.1