Template-based Modeling Results for YDFU_ECOLI

Submitted Primary Sequence

>Length 349
MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQRTKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVLA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQRTKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVLA
CCCCCCCEEECCCEEEEECCCHHHHHHHCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHCCHHHHHHHHHHHCCEECCCCCCCCCCCCEEEEECCCEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQRTKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVLA
5532121110120000002113200310211100022213203402211012232222413200210123300220110100120013303002032131112100011023000000100112124321300220022000100010011102123323010000000000220131013200230021323422222431311213120110022113312213112322323333210102023211311231233232013200300231200000210110000001021122231111000000230021114111201441121020012002200311224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQRTKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVLA
1	PROSPECT2	3qxyA	0.103	0.888	1.394	threading_1	LDAVSRQGTVAGYGMVARES-------VQAGELLFVVPRAALLSQHTCSI------------GGLLERERVALQSQSGWVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYVLPFMEAHPDLFSLRVRSLELYHQLVA---------LVMAYSFQEPLEKEPNSPPKGHNTYGQMANWQLIHMYGFVEPY---------PDNTDDTADIQMVVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEGPAEEFRELKDQKREEGSLTITNIP--KLKASWRQLLQNSVLLTLQTYATDLKTDQGLLSNKEVYALTS
2	HHPRED-l	3g27_A	0.254	0.203	5.206	threading_2	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKAARGIPGVCNGNPETVLAHIR---------KPPDLIATIACSACHDEIDRRTHFVGYAKECALEG-ARTQVIWLKEGVI-
3	PROSPECT2	1l5aa	0.062	0.928	1.241	threading_3	MLLAINLDTVA--HSLRLTGPHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAE-----------------PLAWRQIEQDLQR-SSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLD---GYGMMLFEQRLSQHYQS--LLSGQTPTAAFKPYQSYLEEEAASHRYWQDKQFWQGYLREAPDLTLTSATYDPQSYTLNSQLNHLLLKLANANQIGWGSVAANVPGLMVNSLPLLRLSAQQGNYLKQSGQAIRSLYLHIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGSAEGIQSHWQSHCERFPRFFEQLLARFQARLLAEPAA
4	HHPRED-g	3g27_A	0.254	0.203	4.380	threading_4	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKAARRIPGVCNGNPETVLAHIR---------KPPDLIATIACSACHDEIDRRTHFVGYAKECALEG-ARTQVIWLKEGVI-
5	PROSPECT2	1i8ta	0.084	0.819	1.213	threading_5	MY-----------DYIIVHIGGNAYTEDCEGIQIHKYGAHIF-----------------------HTNDKYIWD----------YVNDLVEFNRFTNSP-------LAIYKDKLFNLPF---------NMNTFHQMWGVKDPQEAQNIINAQKKKYGDKVPNLEEQAISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDYTKLIEKMLEGVDVKLGIDFLKDKDSLASKAHRIIYTGPIDQYFDYRFGALKFETERHEFPNFQGNAVINFTDANHKHFDYVETKHLEWKVGDEPYYPVNDNKNMELFKKYRELASREDQVISAALYQVKNIMSTD---
6	HHPRED-l	3plw_A	0.247	0.255	4.087	threading_6	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRTPTAEERRIANALGALPCIACYMHGISNEVSLHHIAGRTAPGCHK-KQLPLCRWHHQPVHADKKEFTLLNKSEMELLADAYEMA-NIMH--
7	PROSPECT2	1pswA	0.086	0.834	1.208	threading_7	-------------KILVIGPSRTLQARYPQAIIDVAPAWCRPLLSRPEEAIPEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGERYGLLNDVRVLDKEAWPLVERYIALAYDKGIRTAQDLPQLQVSEGEKSYTCNQFSLSSERPIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGY----------QVVLFGSAKDHEAGNEILAALNTEQQ----------AWCRNLAGETQ--------------LDQAVILIAACKAIVTNDSGLHVAAALNPDFTPPLSHKARVIRLITGEGYHQSLIDITPQ------RVLEELNALLLQEE-----A
8	HHPRED-g	3plw_A	0.236	0.255	3.345	threading_8	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GR-TPTAEERRIANALGALPCIACYMHGISNEVSLHHIAGRTAPGCHK-KQLPLCRWHHQPVHADGKEFTLLNKSEMELLADAY-EMANIMH--
9	HHPRED-l	2qgp_A	0.230	0.212	1.191	threading_9	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKREKEKARELRRSQWWKIRGICHYCGEIFPT-DHLVPVVRGGK---STRGNVVPACKECNNRKKYLPVEWEEYLDS-------L-----------
10	HHPRED-g	3g27_A	0.147	0.215	1.558	threading_10	------------------------------------------------------------------------RKAARGRECQ----VR-IPCNGNPETVLAH-----KPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEG-ARTQVIWLKEGV---I--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.556 to 1p0yB SCOP code=a.166.1.1	TM-score=0.344 to 1p71A SCOP code=a.55.1.1	TM-score=0.704 to 1l5aA SCOP code=c.43.1.2	TM-score=0.332 to 1p71A SCOP code=a.55.1.1	TM-score=0.593 to 1i8tA SCOP code=c.4.1.3