Template-based Modeling Results for YDFI_ECOLI

Submitted Primary Sequence

>Length 486
MGNNLLSAKATLPVYDLNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADVWTARVVGVVKKALHVQIDGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAPTLKVQGVDLQDYANRLIARYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIFGDDLPDNSLFTARVTETYLSLLAHGAKATVAKYSVK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MGNNLLSAKATLPVYDLNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADVWTARVVGVVKKALHVQIDGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAPTLKVQGVDLQDYANRLIARYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIFGDDLPDNSLFTARVTETYLSLLAHGAKATVAKYSVK
CCCCCCCCCCCCCCCCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MGNNLLSAKATLPVYDLNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADVWTARVVGVVKKALHVQIDGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAPTLKVQGVDLQDYANRLIARYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIFGDDLPDNSLFTARVTETYLSLLAHGAKATVAKYSVK
553321223121121223202120000000000100000001100233222000000011213210110253232010021134222120000011001122311310011013320100002222200001212121113121011103113213200000020012032232300000001101300200120011003202230020023202000100120022123310120133121313010103201100023321223131321102002302212101010010000000000101113102100213201200110022100100323221022001200210212204220220011002200210030022013232303100000000010012213412203111210110120022123131102000111200132013122002201200220122002200231145
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MGNNLLSAKATLPVYDLNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADVWTARVVGVVKKALHVQIDGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAPTLKVQGVDLQDYANRLIARYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIFGDDLPDNSLFTARVTETYLSLLAHGAKATVAKYSVK
1	MUSTER	1m2wA	0.381	0.973	3.090	threading_1	QNLTQLAPEVKLPAYTLADTRQGIAHIGVGGFHRAHQAYYTDALNTGEGLDWSICGVGLRSERKARDDLAGQDYLFTLYELGDTDTEVRVIGSISDLLA--EDSAQALIDKLASPEIRIVSLTITEGGYCIDDSNGEFA-HLPQIQHDLAHPSSPKTVFGFICAALTQRRAAGIPAFTV-SCDNLPHNGAVTRKALLAFAALHNAELHDWIKAHVSFPN-AVDRITPT-STAHRLQLHDEHGIDDAWPVVCEPFVQWVLEDKFVNGRPAWEKVGVQFTDDVTPYEE-KIGLLNGSHLALTYLGFLKGYRFVHETN-DPLFVAYR--AYDLDVTPNLPVPGIDLTDYKQTLVDRFSNQAIADQLERVCSDGSSKFPKFTVPTINRLIADGRETERAALVVAAWALYLKGVDENGVSYTIPDPRAEFCQGLV---SDDALISQRLLAVEEIFGTAIPNSPEFVAAFERCYGSLRDNGVTTTLKHLLKK
2	SPARKS	1lj8a	0.378	0.973	8.639	threading_2	LNKQNLAPEVKLPAYTLADTRQGIAHIGVGGFHRAHQAYYTDALNTGEGLDWSICGVGLRSDRKARDDLAGQDYLFTLYELGDTDDEVRVIGSISDLLAE--DSAQALIDKLASPEIRIVSLTITEGGYCIDDSNGEFA-HLPQIQHDLAHPSSPKTVFGFICAALTQRRAAGIPAFTV-SCDNLPHNGAVTRKALLAFAALHNAELHDWIKAHVSFPN-AVDRITPT-STAHRLQLHDEHGIDDAWPVVCEPFVQWVLEDKFVNGRPAWEKVGVQFTDDVTPYE-EKIGLLNGSHLALTYLGFLKGYRFVHETN-DPLFVAYRA--YDLDVTPNLPVPGIDLTDYKQTLVDRFSNQAIADQLERVCSDGSSKFPKFTVPTINRLIADGRETERAALVVAAWALYLKGVDENGVSYTIPDPRAEFCQGLV---SDDALISQRLLAVEEIFGTAIPNSPEFVAAFERCYGSLRDNGVTTTLKHLLKK
3	PROSPECT2	1lj8a	0.366	0.973	5.130	threading_3	LNKQNLAPEVKLPAYTLADTRQGIAHIGVGGFHRAHQAYYTDALNTGEGLDWSICGVGLRSEDRKADDLAGQDYLFTLYELGDTDDEVRVIGSISDLLAE--DSAQALIDKLASPEIRIVSLTITEGGYCIDDSNGEFA-HLPQIQHDLAHPSSPKTVFGFICAALTQRRAAG-IPAFTVSCDNLPHNGAVTRKALLAFAALHNAELHDWIKAHVSFPN-AVDRITPT-STAHRLQLHDEHGIDDAWPVVCEPFVQWVLEDKFVNGRPAWEKVGVQFTDDVTPYE-EKIGLLNGSHLALTYLGFLKGYRFVHETNDPLFVA---YRAYDLDVTPNLPVPGIDLTDYKQTLVDRFSNQAIADQLERVCSDGSSKFPKFTVPTINRLIADGRETERAALVVAAWALYLKGVDENGVSYTIPDPRAEFCQGL---VSDDALISQRLLAVEEIFGTAIPNSPEFVAAFERCYGSLRDNGVTTTLKHLLKK
4	PPA-I	1m2wA	0.381	0.973	4.650	threading_4	QNLTQLAPEVKLPAYTLADTRQGIAHIGVGGFHRAHQAYYTDALNTGEGLDWSICGVGLRSDRKARDDLAGQDYLFTLYELGDTDDEVRVIGSISDLLAE--DSAQALIDKLASPEIRIVSLTITEGGYCIDDSNGEFA-HLPQIQHDLAHPSSPKTVFGFICAALTQRRAAGIPAFTV-SCDNLPHNGAVTRKALLAFAALHNAELHDWIKAHVSFPN-AVDRITPT-STAHRLQLHDEHGIDDAWPVVCEPFVQWVLEDKFVNGRPAWEKVGVQFTDDVTPYEE-KIGLLNGSHLALTYLGFLKGYRFVHETNDPLFVAYR---AYDLDVTPNLPVPGIDLTDYKQTLVDRFSNQAIADQLERVCSDGSSKFPKFTVPTINRLIADGRETERAALVVAAWALYLKGVDENGVSYTIPDPRAEFCQGLV---SDDALISQRLLAVEEIFGTAIPNSPEFVAAFERCYGSLRDNGVTTTLKHLLKK
5	HHPRED-l	1lj8_A	0.378	0.969	0.472	threading_5	LNKTQLAPEVKLPAYTLADTRQGIAHIGVGGFHRAHQAYYTDAL-NTGELDWSICGVGLRSEDRARDDLAGQDYLFTLYELGDTDTEVRVIGSISD-LLAE-DSAQALIDKLASPEIRIVSLTITEGGYCIDDSNGEF-AHLPQIQHDLAHPSSPKTVFGFICAALTQRRAAGIPAFTV-SCDNLPHNGAVTRKALLAFAALHNAELHDWIKAHVSFPNA-VDRITP-TSTAHRLQLHDEHGIDDAWPVVCEPFVQWVLEDKFVNGRPAWEKVGVQFTDDVTPYEE-KIGLLNGSHLALTYLGFLKGYRFVHET-NDPLFVAY-RAY-DLDVTPNLAVPGIDLTDYKQTLVDRFSNQAIADQLERVCSDGSSKFPKFTVPTINRLIADGRETERAALVVAAWALYLKGVDENGVSYTIPDPRAEFCQGLVSDD---ALISQRLLAVEEIFGTAIPNSPEFVAAFERCYGSLRDNGVTTTLKHLLK-
6	HHPRED-g	1lj8_A	0.379	0.971	2.710	threading_6	QNLTQLAPEVKLPAYTLADTRQGIAHIGVGGFHRAHQAYYTDAL-NTGELDWSICGVGLRSEDRKARDLAGQDYLFTLYELGDTDTEVRVIGSISD-LLAE-DSAQALIDKLASPEIRIVSLTITEGGYCIDDSNGEF-AHLPQIQHDLAHPSSPKTVFGFICAALTQRRAAGIPAFTV-SCDNLPHNGAVTRKALLAFAALHNAELHDWIKAHVSFPNA-VDRITP-TSTAHRLQLHDEHGIDDAWPVVCEPFVQWVLEDKFVNGRPAWEKVGVQFTDDVTPYEE-KIGLLNGSHLALTYLGFLKGYRFVHET-NDPLFVAY-RAY-DLDVTPNLAVPGIDLTDYKQTLVDRFSNQAIADQLERVCSDGSSKFPKFTVPTINRLIADGRETERAALVVAAWALYLKGVDENGVSYTIPDPRAEFCQGLVSDD---ALISQRLLAVEEIFGTAIPNSPEFVAAFERCYGSLRDNGVTTTLKHLLKK
7	SP3	1lj8a	0.381	0.973	8.708	threading_7	LNKQNLAPEVKLPAYTLADTRQGIAHIGVGGFHRAHQAYYTDALNTGEGLDWSICGVGLRSDRKARDDLAGQDYLFTLYELGDTDTEVRVIGSISDLLAE--DSAQALIDKLASPEIRIVSLTITEGGYCIDDSNGEFA-HLPQIQHDLAHPSSPKTVFGFICAALTQRRAAGIPAFTV-SCDNLPHNGAVTRKALLAFAALHNAELHDWIKAHVSFPN-AVDRITPT-STAHRLQLHDEHGIDDAWPVVCEPFVQWVLEDKFVNGRPAWEKVGVQFTDDVTPYE-EKIGLLNGSHLALTYLGFLKGYRFVHETN-DPLFVA--YRAYDLDVTPNLPVPGIDLTDYKQTLVDRFSNQAIADQLERVCSDGSSKFPKFTVPTINRLIADGRETERAALVVAAWALYLKGVDENGVSYTIPDPRAEFCQGLV---SDDALISQRLLAVEEIFGTAIPNSPEFVAAFERCYGSLRDNGVTTTLKHLLKK
8	SAM-T99	1m2wA	0.381	0.971	9.585	threading_8	QNLTQLAPEVKLPAYTLADTRQGIAHIGVGGFHRAHQAYYTDALNTGEGLDWSICGVGLRSEDKARDDLAGQDYLFTLYELGDTDDEVRVIGSISDLLAED-S-AQALIDKLASPEIRIVSLTITEGGYCIDDSNGEF-AHLPQIQHDLAHPSSPKTVFGFICAALTQRRAAGIPAFTV-SCDNLPHNGAVTRKALLAFAALHNAELHDWIKAHVSFPNA-VDRITPTSTAHRLQLHDEH-GIDDAWPVVCEPFVQWVLEDKFVNGRPAWEKVGVQFTDDVTPYEE-KIGLLNGSHLALTYLGFLKGYRFVHET-NDPLFVAY--RAYDLDVTPNLPVPGIDLTDYKQTLVDRFSNQAIADQLERVCSDGSSKFPKFTVPTINRLIADGRETERAALVVAAWALYLKGVDENGVSYTIPDPRAEFCQGLVSD---DALISQRLLAVEEIFGTAIPNSPEFVAAFERCYGSLRDNGVTTTLKHLLK-
9	MUSTER	3h2zA	0.235	0.745	1.877	threading_9	----------------------KALHFGAGNIGRGFIGKLLADA-------IQLTFADV--NQVVLDALNARH-SYQVHVVG-ETEQVDTVSGV-NAVSSIG---DDVVDLIAQVD--LVTTAV--------------------------GPVVLERIAPAIAKGLVKRKEQGNSPLNIIACENVRGTTQLKGHV-----NALPEDAKAWVEEHVGFVDSAVDRIVPP---------------NDPLEVTVETFSEWIVDKTQFKGALP--NIPGELTDNL-AFVERKLFTLNTGHAITAYLGKLAGHQTIRDAILDEKIRAVVKGAEESGAVL-IKRYGFDHAAYIQKILGRFENPYLKDDVERVGRQPLRKLSDRLIKPLLGTLEYSLPHKNLIQGIAGAH-F----------RSEDDPQAQELAALIAD-KGPQAALAQISG--------LDANSEVVSEAVTAYKAQ---------------
10	SPARKS	3h2za	0.246	0.745	5.149	threading_10	----------------------KALHFGAGNIGRG----FIGKLLADAGIQLTFADVN----QVVLDALNARH-SYQVHVVG-ETEQVDTVSGV-NAVSSIGD---DVVDLIAQVD----------------------------LVTTAVGPVVLERIAPAIAKGLVKRKEQGESPLNIIACENVRGTTQLKGH-----VNALPEDAKAWVEEHVGFVDSAVDRIVPP---------------NDPLEVTVETFSEWIVDKTQFKGALP--NIPGELTDN-LAFVERKLFTLNTGHAITAYLGKLAGHQTIRDAILDEKIRAVVKGAE--ESGAVLKRYGFDHAAYIQKILGRFENPYLKDDVERVGRQPLRKLSARLIKPLLGTLEYSLPHKNLIQGIAG-----------AHFRSEDDPQAQELAALIADKG-PQAALAQISG--------LDANSEVVSEAVTAYKAQ---------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.975 to 1m2wA SCOP code=a.100.1.9	TM-score=0.974 to 1m2wA SCOP code=a.100.1.9	TM-score=0.964 to 1m2wA SCOP code=a.100.1.9	TM-score=0.964 to 1m2wA SCOP code=a.100.1.9	TM-score=0.974 to 1m2wA SCOP code=a.100.1.9