Template-based Modeling Results for YDFG_ECOLI

Submitted Primary Sequence

>Length 248
MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYAGLNVHRQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYAGLNVHRQ
CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYAGLNVHRQ
21000000010001000220143102000001233102301330142000010103242002300220132013000000000001011102301231022000000200010011002001423300000000000121121010100010002200210021133220100000112111211221224222220231133120020200020001003113212001010000222221222236
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYAGLNVHRQ
1	MUSTER	3rkuA	0.362	0.992	2.446	threading_1	KTVLITGASAGIGKATALEYLEASMKLILAARRLEKLEELKKTIDAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETE-FSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATSRKQNTVIADTLIFPTNQA-SPHHIFRG
2	SPARKS	3p19a	0.318	0.952	2.611	threading_2	KLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN---LPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMML-LGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGVLAADDVARAVLFAYQQPQNVCIREIALAPTKQQP--------
3	PROSPECT2	3rkuA	0.370	0.992	3.965	threading_3	KTVLITGASAGIGKATALEYLEGDMKLILAARRLEKLEELKKTINAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLV-ETEFSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATSRKQNTVIADTLIFPTNQA-SPHHIFRG
4	PPA-I	3p19A	0.318	0.952	2.546	threading_4	KLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN---LPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMML-LGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDGGVLAADDVARAVLFAYQQPQNVCIREIALAPTKQQP--------
5	HHPRED-l	3ak4_A	0.209	0.964	1.447	threading_5	RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVST-MRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEVRAEYVSLTPLGRIEEPEDVADVVVFLASDARFMTGQGINV------TGGVRMD--
6	HHPRED-g	2bd0_A	0.245	0.923	1.231	threading_6	HILLITGAGKGIGRAIALEFARAARHLVLSSRTAADLEKISLECGALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGR-FGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAV-YTPMWGK-VDDE-MQ-------ALMMMPEDIAAPVVQAYLQPSRTVVEEIILRPTSGDI--------
7	SP3	3rkua	0.362	0.992	2.801	threading_7	KTVLITGASAGIGKATALEYLEASMKLILAARRLEKLEELKKTIDAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETE-FSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATSRKQNTVIADTLIFPTNQA-SPHHIFRG
8	SAM-T99	3asuA	0.995	0.879	2.132	threading_8	MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGV----------------------ALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSY--------
9	MUSTER	3p19A	0.322	0.952	2.444	threading_9	MLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN---LPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMML-LGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGVLAADDVARAVLFAYQQPQNVCIREIALAPTKQQP--------
10	SPARKS	3rkua	0.362	0.992	2.558	threading_10	KTVLITGASAGIGKATALEYLEASMKLILAARRLEKLEELKKTIDQEVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETE-FSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATSRKQNTVIADTLIFPTNQA-SPHHIFRG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.889 to 1xg5C SCOP code=c.2.1.2	TM-score=0.881 to 1edoA SCOP code=c.2.1.2	TM-score=0.882 to 1edoA SCOP code=c.2.1.2	TM-score=0.891 to 1xg5C SCOP code=c.2.1.2	TM-score=0.880 to 1edoA SCOP code=c.2.1.2