Template-based Modeling Results for YDER_ECOLI

Submitted Primary Sequence

>Length 167
MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDAALKNGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALINVIYTWQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDAALKNGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALINVIYTWQ
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEECCCCEEEECCCEEHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDAALKNGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALINVIYTWQ
43321110000000000000020120101010200221020234202020020103202431222233202010110224121010001022212111313220200100012333221321312101112232201010100001132401202020101020223
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDAALKNGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALINVIYTWQ
1	MUSTER	3bfwA	0.561	0.790	2.862	threading_1	-----------------------------------AKPCTVSTTNATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVISITYTYS
2	SPARKS	3jwng	0.590	0.862	4.460	threading_2	-----------------------ADVTITVNGKVVAKPCTVSTTNATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVISITYTYS
3	PROSPECT2	3bfqG	0.561	0.790	2.473	threading_3	-----------------------------------AKPCTVSTTNATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVISITYTYS
4	PPA-I	3bfwA	0.561	0.790	3.660	threading_4	-----------------------------------AKPCTVSTTNATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVISITYTYS
5	HHPRED-l	3bfq_G	0.565	0.784	4.031	threading_5	-----------------------------------AKPCTVSTTNATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVISITYTY-
6	HHPRED-g	2uy6_B	0.197	0.820	3.974	threading_6	--------------------------KVTFNNTVVDAPCSISQADQSIDFGQLSKSFLEAGGV-SKPMDLDIELVNCDITAFTVKLAFTGPIVNSDELDTNGGTGL-AIVV-QGAGKNVVFDGEGDAN-TLKDGENVLHYTAVVKKVGAAVTEGAFSAVANFNLTYQ
7	SP3	3jwng	0.590	0.862	4.163	threading_7	-----------------------ADVTITVNGKVVAKPCTVSTTNATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVISITYTYS
8	SAM-T99	2jtyA	0.226	0.874	3.984	threading_8	-------------------AATTVNGTVHFKGEVVNAACAVDSVDQTVQLGQVRTASLAQEGATSSAVGFNIQLNDCDTNVSKAAVAFLGTAIHTNVLALQGSATNVGVQILDRTGAALTLDATFSSETTLNNGTNTIPFQARYFAT-GAATPGAANADATFKVQY-
9	MUSTER	2j2zB	0.165	0.832	2.504	threading_9	--------------------------RAAFHGEVVRPACTLAMEDQIIDMGETPVRDLQN-GFSGPERKFSLRLRNCEFSDSRIRVTFDGVRGTPDKFNLSGQAKGINLQIADVRGNIARAGKVMP-AIPLTGNEEALDYTLRIVRNGKKLEAGNYFAVLGFRVDYE
10	SPARKS	3jwne	0.201	0.862	4.191	threading_10	-----------------------ADSTITIRGYVRDNGCSVAAESFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNLENTVSAAAGLGIQLLNEQQNQIPLNAPSSWTTLTPGKPNTLNFYARLMATQVPVTAGHINATATFTLEYQ

Predicted Tertiary Structure


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TM-score=0.700 to 1pdkB SCOP code=b.2.3.2	TM-score=0.700 to 1pdkB SCOP code=b.2.3.2	TM-score=0.696 to 1pdkB SCOP code=b.2.3.2	TM-score=0.694 to 1pdkB SCOP code=b.2.3.2	TM-score=0.700 to 1pdkB SCOP code=b.2.3.2