Template-based Modeling Results for YDEO_ECOLI

Submitted Primary Sequence

>Length 253
MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI
CCEEEEEEEECCCEEEEECCEEEEECCCCEEEECCCCEEEEECCCCCEEEEEECHHHHHHHHHHCCHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI
4311000000132010102322000241100002311202021134202000011300220031022311212121321212301210022002102223323330021000000100120321021123222200110130023212220203100210110211032104424120120011010210221133302012002202121111002001421310132003213322432232232232134
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI
1	MUSTER	3gbgA	0.162	0.901	2.174	threading_1	YINDYKMFWISGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLTSLSVSVITISDSFIRSLKSYIL------NKDLLLWNCEHNDIAVLSEVVNGFREI-NYSDEFLKVFFSGFFSKVEK--KYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV----------------
2	SPARKS	3gbga	0.148	0.905	3.624	threading_2	INDYKMFWIDSGIAKLIDCLVSYEINSSSIILLKKNSIQRFSLTSLSVSVITISDSFIRSLKSYIL-----GNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKV---EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV----------------
3	PROSPECT2	3gbgA	0.166	0.905	2.919	threading_3	KSFQTNVYRMSKFDTYIFCLVSYEINSSSIILLKKNSIQRFSLTSLSVSVITISDSFIRSLKSYIL------GNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYN--SIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLT----------------GV
4	PPA-I	3gbgA	0.153	0.905	2.692	threading_4	INDYKMFWIDSGIAKLIDCLVSYEINSSSIILLKKNSIQRFSLTSLSVSVITISDSFIRSLKSYI------LGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEK--KYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV----------------
5	HHPRED-l	3gbg_A	0.167	0.897	4.155	threading_5	INDYKMFWIDSGIAK-LIDKVSYEINSSSIILLKKNSIQRFSLLNINVSVITISDSFIRSLKSYILG------NKDLLLNCEHNDIAVLSEVVNGFREIN-YSDEFLKVFFSGFFSKVEKKYNS--IFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV----------------
6	HHPRED-g	3gbg_A	0.174	0.885	3.768	threading_6	INDYKMFWIDSGIAK-LIDKVSYEINSSSIILLKKNSIQRFSLENINVSVITISDSFIRSLKSYILG---------DLLNCEHNDIAVLSEVVNGFREI-NYSDEFLKVFFSGFFSKVEKKYNSI--FITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV----------------
7	SP3	3gbga	0.171	0.925	3.804	threading_7	YINDYKMFWIDSGIAKLIDKVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFREI-NYSDEFLKVFFSGFFSKV--EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFML----------------TGV
8	SAM-T99	3gbgA	0.182	0.870	2.660	threading_8	YINDYKMFWIDSGIAKLIDKNSYEINSSSIILLKKNSIQRFSDENINVSVITISDSFIRSLKSYI--------LGNKDLLLWNCEHNDIAVLSEVVNGFREINDEFLKVFFSGFFSKVEKKYNS--IFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEY-----------------------
9	MUSTER	2k9sA	0.173	0.411	1.269	threading_9	-----------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQGISVLSWREDQRISQAKLLLSTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE------------------
10	SPARKS	3ooua	0.238	0.399	2.174	threading_10	------------------------------------------------------------------------------------------------------------------------------------SPIIQNVLSYITEHFSEG-SLKTLGNDFHINAVYLGQLFQKEGEHFTDYLNRYRVNYAKEELLTKDNLTIIAGKSGYTDA-YFYRQFKKHTGETPNRYRKIHQ------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.483 to 1d5yA SCOP code=a.4.1.8	TM-score=0.485 to 1d5yA SCOP code=a.4.1.8	TM-score=0.481 to 1d5yA SCOP code=a.4.1.8	TM-score=0.484 to 1d5yA SCOP code=a.4.1.8	TM-score=0.487 to 1d5yA SCOP code=a.4.1.8