Template-based Modeling Results for YDEN_ECOLI

Submitted Primary Sequence

>Length 560
MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAFSDFTPTEYSTKGKPNIIVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAIEAAQKSTPTLLSLMDEGVRFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGIPLTETFLPELFQNHGYYTAAVGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQNRGFDYFMGFHAAGTAYYNSPSLFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPFMLYLAYNAPHLPNDNPAPDQYQKQFNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQYDNTIILFTSDNGAVIDGPLPLNGAQKGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKLISAMDFYPTALDAADISIPKDLKLDGVSLLPWLQDKKQGEPHKNLTWITSYSHWFDEENIPFWDNYHKFVRHQSDDYPHNPNTEDLSQFSYTVRNNDYSLVYTVENNQLGLYKLTDLQQKDNLAAANPQVVKEMQGVVREFIDSSQPPLSEVNQEKFNNIKKALSEAK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAFSDFTPTEYSTKGKPNIIVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAIEAAQKSTPTLLSLMDEGVRFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGIPLTETFLPELFQNHGYYTAAVGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQNRGFDYFMGFHAAGTAYYNSPSLFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPFMLYLAYNAPHLPNDNPAPDQYQKQFNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQYDNTIILFTSDNGAVIDGPLPLNGAQKGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKLISAMDFYPTALDAADISIPKDLKLDGVSLLPWLQDKKQGEPHKNLTWITSYSHWFDEENIPFWDNYHKFVRHQSDDYPHNPNTEDLSQFSYTVRNNDYSLVYTVENNQLGLYKLTDLQQKDNLAAANPQVVKEMQGVVREFIDSSQPPLSEVNQEKFNNIKKALSEAK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAFSDFTPTEYSTKGKPNIIVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAIEAAQKSTPTLLSLMDEGVRFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGIPLTETFLPELFQNHGYYTAAVGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQNRGFDYFMGFHAAGTAYYNSPSLFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPFMLYLAYNAPHLPNDNPAPDQYQKQFNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQYDNTIILFTSDNGAVIDGPLPLNGAQKGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKLISAMDFYPTALDAADISIPKDLKLDGVSLLPWLQDKKQGEPHKNLTWITSYSHWFDEENIPFWDNYHKFVRHQSDDYPHNPNTEDLSQFSYTVRNNDYSLVYTVENNQLGLYKLTDLQQKDNLAAANPQVVKEMQGVVREFIDSSQPPLSEVNQEKFNNIKKALSEAK
54321131000000000000000000121122110100100000010011222342200000000000110101012011323112223223223221332231232200100000320010210101111000000001102010201012013133111222210020033211100000100012123110132231331121111111331223231122110111111111112111334342224210121002100000331333321000000010110112221122124213322210110000020002003200210352232200000000111111202111101131231211210010000010213143131231010000000001005031243231200000210233433331200000112222133321212322120112322312222223222322110124301001113333210141311311220032123003201200230032122212323334123123222324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAFSDFTPTEYSTKGKPNIIVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAIEAAQKSTPTLLSLMDEGVRFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGIPLTETFLPELFQNHGYYTAAVGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQNRGFDYFMGFHAAGTAYYNSPSLFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPFMLYLAYNAPHLPNDNPAPDQYQKQFNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQYDNTIILFTSDNGAVIDGPLPLNGAQKGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKLISAMDFYPTALDAADISIPKDLKLDGVSLLPWLQDKKQGEPHKNLTWITSYSHWFDEENIPFWDNYHKFVRHQSDDYPHNPNTEDLSQFSYTVRNNDYSLVYTVENNQLGLYKLTDLQQKDNLAAANPQVVKEMQGVVREFIDSSQPPLSEVNQEKFNNIKKALSEAK
1	MUSTER	1fsuA	0.219	0.823	2.874	threading_1	------------------------------------------------------SRPPHLVFLLADDLGWNDVGFHGS---------------------------RIRTPHLDALAAGGVLLDNYYTQP--LTPSRSQLLTGRYQIRTGLQHQPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHERCTLIDA-LNVTRCALDFRDGEEVATG----YKNMYSTNIFTKRAIALITNH-PPEKPLFLYLALQSVHEPLQVPEE--YLKPYDFIQDKRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQT-LAGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNF-VDSSPCSAFNTSVHAAIRHGNWKLLTGYPGCGYWFPPPSQYNVSEIPSSDPPTKTLWLFDIDDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDP------KAT
2	SPARKS	1fsu_	0.203	0.836	5.620	threading_2	------------------------------------------------------SRPPHLVFLLADDLGWNDVGFHGSR---------------------------IRTPHLDALAAGGVLLDNYYTQP--LTPSRSQLLTGRYQIRTGLQHWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHERCTLIDALNVTRCALDFRDGEEV-----ATGYKNMYSTNIFTKRAIALIT-NHPPEKPLFLYLALQSVHEPLQVP-EEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQT-LAGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCSAFNTSVHAAIRHGNWKLLTGYPGCGYWFPPPSQYNVSEIPS-SDPPTKTLWLFDIDDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDPKATGVWGPW
3	PROSPECT2	3ed4A	0.275	0.746	5.012	threading_3	--------------------------------------------------------QPNLVIIMADDLGYGDLATYGH--------------------------QIVKTPNIDRLAQEGVKFTDYYAPAPLSSPSRAGLLTGRMPFRTGIRSWSGKDVALGRNELTIANLLKAQGYDTAMMGKLHLNAGGD-------------------RTDQPQAQDMGFDYSLANTAGFVTDYPTGWLRNGQPTPRADKMSGEYVSSEVVNWLDNK-KDSKPFFLYVAFTEVHSPLASPKKYLYGDWADKPWRGVGEYYANISYLDAQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTRNLAGETDGLRGRKDNLWEGGIRVPAIIKYGKHLPQGMSDTPVYGLDWMPTLAKMMNFKLPTDRTFDGESLVPVLEQKALKREKPLIFG-------------------------------IDMPFQDDPTDEWAIRDGDWKMIIDRNNKPKYLYNLSDRYETLNLIGKKPDIEKQMYGKFLKYKTDIDND---------SLMKARGDKPE
4	PPA-I	1fsuA	0.201	0.836	4.365	threading_4	------------------------------------------------------SRPPHLVFLLADDLGWNDVGFHGSR---------------------------IRTPHLDALAAGGVLLDNYYTQP--LTPSRSQLLTGRYQIRTGLQHQPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHER-----CTLIDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIALITNH-PPEKPLFLYLALQSVHEPLQVPEEYLKPYD-FIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQT-LAGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCSAFNTSVHAAIRHGNWKLLTGYPGCGYWFPPPSQYNVSEI-PSSDPPTKTLWLFDIRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDPKATGVWGPW
5	HHPRED-l	1fsu_A	0.215	0.789	4.673	threading_5	------------------------------------------------------SRPPHLVFLLADDLGWNDVGFHGSR---------------------------IRTPHLDALAAGGVLLDNYYTQ-PL-TPSRSQLLTGRYQIRTGLQHQIIQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTR---RGFDTYFGYLLGSEDYYSHERCTLIDALNRCALDFRDG----EEVATGYKNMYSTNIFTKRAIALITNH-PPEKPLFLYLALQSVHEPLQVPEEYLKPY-DFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQTLAGG-NNWPLRGRKWSLWEGGVRGVGFVASPLLKQGVKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPC------------------------SAFNTSVHAAIRHGNWKLLTGYPTKTLWLFDIRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDPATGVWGPW-
6	HHPRED-g	1fsu_A	0.219	0.791	4.254	threading_6	------------------------------------------------------SRPPHLVFLLADDLGWNDVGFHGS---------------------------RIRTPHLDALAAGGVLLDNYYT-QPL-TPSRSQLLTGRYQIRTGLQHQPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHERCTLIDALNV--TR-----CALDFRDGEEVAYKNMYSTNIFTKRAIALITNH-PPEKPLFLYLALQSVHEPLQVPEEYLKPYDF-IQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQTL-AGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSS-------PC-----------------SAFNTSVHAAIRHGNWKLLTGYPTKTLWLFDIDDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDPKATGVWGPW
7	SP3	1fsu_	0.203	0.836	5.421	threading_7	------------------------------------------------------SRPPHLVFLLADDLGWNDVGFHGSRI---------------------------RTPHLDALAAGGVLLDNYYT--QPLTPSRSQLLTGRYQIRTGLQHWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHERCTLIDALNVTRCALDFR-----DGEEVATGYKNMYSTNIFTKRAIALIT-NHPPEKPLFLYLALQSVHEPLQVP-EEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQTL-AGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCSAFNTSVHAAIRHGNWKLLTGYPGCGYWFPPPSQYNVSEIPS-SDPPTKTLWLFDIRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDPKATGVWGPW
8	SAM-T99	1fsuA	0.248	0.762	4.827	threading_8	------------------------------------------------------SRPPHLVFLLADDLGWNDVGFHGSR---------------------------IRTPHLDALAAGGVLLDNYYT-QPL-TPSRSQLLTGRYQIRTGLQHQICQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYR----------------------KECLPTRRGFDTYFGYLLGSEDYYSHELDFRDGEEVYKNMYSTNIFTKRAIALITNHP-PEKPLFLYLALQSVHEPLQ--VPEEYLKPYDIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQ-TLAGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCSAFNTS------------------------VHAAIRHGNWKLLTGYPGCTLWLFDIDDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYPAQDPRCDPKATGVWGPWM
9	MUSTER	3ed4B	0.263	0.773	2.723	threading_9	--------------------------------------------------NAFSPKQPNLVIIMADDLGYGDLATYGH--------------------------QIVKTPNIDRLAQEGVKFTDYYAPAPLSSPSRAGLLTGRMPFRTGIRSWIGKDVALGRNELTIANLLKAQGYDTAMMGKLHLNAGGDQPQAQDMGFDYSLANTAGFVTDATLDNAKERPRY-------GMVYPTGWLRNGQPTPRADKMSGEYVSSEVVNWLDNK-KDSKPFFLYVAFTEVHSPLASP--KKYLDMYSQYWRGVGEYYANISYLDAQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTLNLAGETDGLRGRKDNLWEGGIRVPAIIKYGKHLPQGMSDTPVYGLDWMPTLAKMMNFKLPTDRTFDGESLVPVLEQKALKREKPLIFGIDMPFQ-------------------------------DDPTDEWAIRDGDWKMIIDRNNKPKYLYNLSDRYETLNLIGKKPDIEKQMYGKFLKYKTDIDN----------DSLMKARDKPE
10	SPARKS	2w8sa	0.197	0.796	5.247	threading_10	--------------------------------------------------------RKNVLLIVVDQWRADFIPHLMRAEG---------------------REPFLKTPNLDRLCREGLTFRNHVT-TCVPGPARASLLTGLYLMNHRAVQN---TVPLDQRHLNLGKALRAIGYDPALIGYTTTTPDPRTTSARDPRFTVLGDIMDGFRSVGAFEAQNGFELPENREWLPEGEHSVPGATDKPSRIPKEFSDSTFFTERALTYLKGR--DGKPFFLHLGYYRPHPPFVASAHPLMKHYIDHIRRMRATYCGLITEIDDCLGRVFAYLDETGQWDDTLIIFTSDHGEQLGDHH------LLGKIGYNAESFRIPLVIKDAGQNRHAIEEGFSESIDVMPTILEWLGGETPRA--CDGRSLLPFLAEGKPSDWRTELHYEFDFRDVF------------------YDQPQNSVQLSQDDCSLCVIEDENYKYVHF-AALPPLFFDLKDPHEFSNLAPAYAALVRDYAQKALSWRLSHARTLTHYRSSPQGLTTRNH----

Predicted Tertiary Structure


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TM-score=0.881 to 1fsuA SCOP code=c.76.1.2	TM-score=0.892 to 1fsuA SCOP code=c.76.1.2	TM-score=0.891 to 1fsuA SCOP code=c.76.1.2	TM-score=0.728 to 1fsuA SCOP code=c.76.1.2	TM-score=0.889 to 1fsuA SCOP code=c.76.1.2